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FAM227B (family with sequence similarity 227 member B)

Identity

Alias_namesC15orf33
chromosome 15 open reading frame 33
family with sequence similarity 227, member B
Alias_symbol (synonym)FLJ32800
Other alias
HGNC (Hugo) FAM227B
LocusID (NCBI) 196951
Atlas_Id 63166
Location 15q21.2  [Link to chromosome band 15q21]
Location_base_pair Starts at 49422515 and ends at 49620931 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DTWD1 (15q21.2) / FAM227B (15q21.2)TRPM7 (15q21.2) / FAM227B (15q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM227B   26543
Cards
Entrez_Gene (NCBI)FAM227B  196951  family with sequence similarity 227 member B
AliasesC15orf33
GeneCards (Weizmann)FAM227B
Ensembl hg19 (Hinxton)ENSG00000166262 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166262 [Gene_View]  chr15:49422515-49620931 [Contig_View]  FAM227B [Vega]
ICGC DataPortalENSG00000166262
TCGA cBioPortalFAM227B
AceView (NCBI)FAM227B
Genatlas (Paris)FAM227B
WikiGenes196951
SOURCE (Princeton)FAM227B
Genetics Home Reference (NIH)FAM227B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM227B  -     chr15:49422515-49620931 -  15q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM227B  -     15q21.2   [Description]    (hg19-Feb_2009)
EnsemblFAM227B - 15q21.2 [CytoView hg19]  FAM227B - 15q21.2 [CytoView hg38]
Mapping of homologs : NCBIFAM227B [Mapview hg19]  FAM227B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023699 AK057362 BC048125 BC048139 BG182490
RefSeq transcript (Entrez)NM_001330293 NM_152647
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM227B
Cluster EST : UnigeneHs.712959 [ NCBI ]
CGAP (NCI)Hs.712959
Alternative Splicing GalleryENSG00000166262
Gene ExpressionFAM227B [ NCBI-GEO ]   FAM227B [ EBI - ARRAY_EXPRESS ]   FAM227B [ SEEK ]   FAM227B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM227B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196951
GTEX Portal (Tissue expression)FAM227B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M60
Splice isoforms : SwissVarQ96M60
PhosPhoSitePlusQ96M60
Domains : Interpro (EBI)FAM227   
Domain families : Pfam (Sanger)FWWh (PF14922)   
Domain families : Pfam (NCBI)pfam14922   
Conserved Domain (NCBI)FAM227B
DMDM Disease mutations196951
Blocks (Seattle)FAM227B
SuperfamilyQ96M60
Human Protein AtlasENSG00000166262
Peptide AtlasQ96M60
HPRD08139
IPIIPI00065349   IPI00384478   
Protein Interaction databases
DIP (DOE-UCLA)Q96M60
IntAct (EBI)Q96M60
FunCoupENSG00000166262
BioGRIDFAM227B
STRING (EMBL)FAM227B
ZODIACFAM227B
Ontologies - Pathways
QuickGOQ96M60
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM227B
Atlas of Cancer Signalling NetworkFAM227B
Wikipedia pathwaysFAM227B
Orthology - Evolution
OrthoDB196951
GeneTree (enSembl)ENSG00000166262
Phylogenetic Trees/Animal Genes : TreeFamFAM227B
HOVERGENQ96M60
HOGENOMQ96M60
Homologs : HomoloGeneFAM227B
Homology/Alignments : Family Browser (UCSC)FAM227B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM227B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM227B
dbVarFAM227B
ClinVarFAM227B
1000_GenomesFAM227B 
Exome Variant ServerFAM227B
ExAC (Exome Aggregation Consortium)FAM227B (select the gene name)
Genetic variants : HAPMAP196951
Genomic Variants (DGV)FAM227B [DGVbeta]
DECIPHERFAM227B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM227B 
Mutations
ICGC Data PortalFAM227B 
TCGA Data PortalFAM227B 
Broad Tumor PortalFAM227B
OASIS PortalFAM227B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM227B
BioMutasearch FAM227B
DgiDB (Drug Gene Interaction Database)FAM227B
DoCM (Curated mutations)FAM227B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM227B (select a term)
intoGenFAM227B
Cancer3DFAM227B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM227B
Genetic Testing Registry FAM227B
NextProtQ96M60 [Medical]
TSGene196951
GENETestsFAM227B
Target ValidationFAM227B
Huge Navigator FAM227B [HugePedia]
snp3D : Map Gene to Disease196951
BioCentury BCIQFAM227B
ClinGenFAM227B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196951
Chemical/Pharm GKB GenePA142672269
Clinical trialFAM227B
Miscellaneous
canSAR (ICR)FAM227B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM227B
EVEXFAM227B
GoPubMedFAM227B
iHOPFAM227B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:57 CEST 2017

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