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FAM228A (family with sequence similarity 228 member A)

Identity

Alias_namesC2orf84
chromosome 2 open reading frame 84
family with sequence similarity 228, member A
Alias_symbol (synonym)FLJ30851
Other alias
HGNC (Hugo) FAM228A
LocusID (NCBI) 653140
Atlas_Id 63167
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 24175043 and ends at 24191698 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM228A   34418
Cards
Entrez_Gene (NCBI)FAM228A  653140  family with sequence similarity 228 member A
AliasesC2orf84
GeneCards (Weizmann)FAM228A
Ensembl hg19 (Hinxton)ENSG00000186453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186453 [Gene_View]  chr2:24175043-24191698 [Contig_View]  FAM228A [Vega]
ICGC DataPortalENSG00000186453
TCGA cBioPortalFAM228A
AceView (NCBI)FAM228A
Genatlas (Paris)FAM228A
WikiGenes653140
SOURCE (Princeton)FAM228A
Genetics Home Reference (NIH)FAM228A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM228A  -     chr2:24175043-24191698 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM228A  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblFAM228A - 2p23.3 [CytoView hg19]  FAM228A - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIFAM228A [Mapview hg19]  FAM228A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC050462 HY022970
RefSeq transcript (Entrez)NM_001040710
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM228A
Cluster EST : UnigeneHs.741736 [ NCBI ]
CGAP (NCI)Hs.741736
Alternative Splicing GalleryENSG00000186453
Gene ExpressionFAM228A [ NCBI-GEO ]   FAM228A [ EBI - ARRAY_EXPRESS ]   FAM228A [ SEEK ]   FAM228A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM228A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653140
GTEX Portal (Tissue expression)FAM228A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86W67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86W67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86W67
Splice isoforms : SwissVarQ86W67
PhosPhoSitePlusQ86W67
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM228A
DMDM Disease mutations653140
Blocks (Seattle)FAM228A
SuperfamilyQ86W67
Human Protein AtlasENSG00000186453
Peptide AtlasQ86W67
IPIIPI00384372   IPI00893776   IPI00893666   IPI00893547   
Protein Interaction databases
DIP (DOE-UCLA)Q86W67
IntAct (EBI)Q86W67
FunCoupENSG00000186453
BioGRIDFAM228A
STRING (EMBL)FAM228A
ZODIACFAM228A
Ontologies - Pathways
QuickGOQ86W67
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM228A
Atlas of Cancer Signalling NetworkFAM228A
Wikipedia pathwaysFAM228A
Orthology - Evolution
OrthoDB653140
GeneTree (enSembl)ENSG00000186453
Phylogenetic Trees/Animal Genes : TreeFamFAM228A
HOVERGENQ86W67
HOGENOMQ86W67
Homologs : HomoloGeneFAM228A
Homology/Alignments : Family Browser (UCSC)FAM228A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM228A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM228A
dbVarFAM228A
ClinVarFAM228A
1000_GenomesFAM228A 
Exome Variant ServerFAM228A
ExAC (Exome Aggregation Consortium)FAM228A (select the gene name)
Genetic variants : HAPMAP653140
Genomic Variants (DGV)FAM228A [DGVbeta]
DECIPHERFAM228A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM228A 
Mutations
ICGC Data PortalFAM228A 
TCGA Data PortalFAM228A 
Broad Tumor PortalFAM228A
OASIS PortalFAM228A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM228A
BioMutasearch FAM228A
DgiDB (Drug Gene Interaction Database)FAM228A
DoCM (Curated mutations)FAM228A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM228A (select a term)
intoGenFAM228A
Cancer3DFAM228A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM228A
Genetic Testing Registry FAM228A
NextProtQ86W67 [Medical]
TSGene653140
GENETestsFAM228A
Target ValidationFAM228A
Huge Navigator FAM228A [HugePedia]
snp3D : Map Gene to Disease653140
BioCentury BCIQFAM228A
ClinGenFAM228A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653140
Chemical/Pharm GKB GenePA164717160
Clinical trialFAM228A
Miscellaneous
canSAR (ICR)FAM228A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM228A
EVEXFAM228A
GoPubMedFAM228A
iHOPFAM228A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:57 CEST 2017

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