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FAM228B (family with sequence similarity 228 member B)

Identity

Alias_namesfamily with sequence similarity 228, member B
Other alias-
HGNC (Hugo) FAM228B
LocusID (NCBI) 375190
Atlas_Id 63168
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 24123480 and ends at 24169638 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM228B   24736
Cards
Entrez_Gene (NCBI)FAM228B  375190  family with sequence similarity 228 member B
Aliases
GeneCards (Weizmann)FAM228B
Ensembl hg19 (Hinxton)ENSG00000219626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000219626 [Gene_View]  chr2:24123480-24169638 [Contig_View]  FAM228B [Vega]
ICGC DataPortalENSG00000219626
TCGA cBioPortalFAM228B
AceView (NCBI)FAM228B
Genatlas (Paris)FAM228B
WikiGenes375190
SOURCE (Princeton)FAM228B
Genetics Home Reference (NIH)FAM228B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM228B  -     chr2:24123480-24169638 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM228B  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblFAM228B - 2p23.3 [CytoView hg19]  FAM228B - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIFAM228B [Mapview hg19]  FAM228B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029459 BM722814 BM969566 CN395744 HQ448633
RefSeq transcript (Entrez)NM_001145710 NM_001291328 NM_198553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM228B
Cluster EST : UnigeneHs.710370 [ NCBI ]
CGAP (NCI)Hs.710370
Alternative Splicing GalleryENSG00000219626
Gene ExpressionFAM228B [ NCBI-GEO ]   FAM228B [ EBI - ARRAY_EXPRESS ]   FAM228B [ SEEK ]   FAM228B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM228B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375190
GTEX Portal (Tissue expression)FAM228B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C875   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C875  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C875
Splice isoforms : SwissVarP0C875
PhosPhoSitePlusP0C875
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM228B
DMDM Disease mutations375190
Blocks (Seattle)FAM228B
SuperfamilyP0C875
Human Protein AtlasENSG00000219626
Peptide AtlasP0C875
HPRD13403
IPIIPI00892946   IPI00043670   IPI00913895   IPI00892555   IPI00892694   IPI00894399   
Protein Interaction databases
DIP (DOE-UCLA)P0C875
IntAct (EBI)P0C875
FunCoupENSG00000219626
BioGRIDFAM228B
STRING (EMBL)FAM228B
ZODIACFAM228B
Ontologies - Pathways
QuickGOP0C875
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM228B
Atlas of Cancer Signalling NetworkFAM228B
Wikipedia pathwaysFAM228B
Orthology - Evolution
OrthoDB375190
GeneTree (enSembl)ENSG00000219626
Phylogenetic Trees/Animal Genes : TreeFamFAM228B
HOVERGENP0C875
HOGENOMP0C875
Homologs : HomoloGeneFAM228B
Homology/Alignments : Family Browser (UCSC)FAM228B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM228B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM228B
dbVarFAM228B
ClinVarFAM228B
1000_GenomesFAM228B 
Exome Variant ServerFAM228B
ExAC (Exome Aggregation Consortium)FAM228B (select the gene name)
Genetic variants : HAPMAP375190
Genomic Variants (DGV)FAM228B [DGVbeta]
DECIPHERFAM228B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM228B 
Mutations
ICGC Data PortalFAM228B 
TCGA Data PortalFAM228B 
Broad Tumor PortalFAM228B
OASIS PortalFAM228B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM228B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM228B
DgiDB (Drug Gene Interaction Database)FAM228B
DoCM (Curated mutations)FAM228B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM228B (select a term)
intoGenFAM228B
Cancer3DFAM228B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM228B
Genetic Testing Registry FAM228B
NextProtP0C875 [Medical]
TSGene375190
GENETestsFAM228B
Target ValidationFAM228B
Huge Navigator FAM228B [HugePedia]
snp3D : Map Gene to Disease375190
BioCentury BCIQFAM228B
ClinGenFAM228B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375190
Chemical/Pharm GKB GenePA166048962
Clinical trialFAM228B
Miscellaneous
canSAR (ICR)FAM228B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM228B
EVEXFAM228B
GoPubMedFAM228B
iHOPFAM228B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:57 CEST 2017

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