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FAM229A (family with sequence similarity 229 member A)

Identity

Alias_namesfamily with sequence similarity 229, member A
Other alias-
HGNC (Hugo) FAM229A
LocusID (NCBI) 100128071
Atlas_Id 63169
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 32361270 and ends at 32362243 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM229A   44652
Cards
Entrez_Gene (NCBI)FAM229A  100128071  family with sequence similarity 229 member A
Aliases
GeneCards (Weizmann)FAM229A
Ensembl hg19 (Hinxton)ENSG00000225828 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225828 [Gene_View]  chr1:32361270-32362243 [Contig_View]  FAM229A [Vega]
ICGC DataPortalENSG00000225828
TCGA cBioPortalFAM229A
AceView (NCBI)FAM229A
Genatlas (Paris)FAM229A
WikiGenes100128071
SOURCE (Princeton)FAM229A
Genetics Home Reference (NIH)FAM229A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM229A  -     chr1:32361270-32362243 -  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM229A  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblFAM229A - 1p35.1 [CytoView hg19]  FAM229A - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIFAM229A [Mapview hg19]  FAM229A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093734 AK125095 BC064432 BC073915 BC111382
RefSeq transcript (Entrez)NM_001167676
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM229A
Cluster EST : UnigeneHs.660539 [ NCBI ]
CGAP (NCI)Hs.660539
Alternative Splicing GalleryENSG00000225828
Gene ExpressionFAM229A [ NCBI-GEO ]   FAM229A [ EBI - ARRAY_EXPRESS ]   FAM229A [ SEEK ]   FAM229A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM229A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128071
GTEX Portal (Tissue expression)FAM229A
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BQW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BQW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BQW9
Splice isoforms : SwissVarH3BQW9
PhosPhoSitePlusH3BQW9
Domains : Interpro (EBI)FAM229   
Domain families : Pfam (Sanger)UPF0731 (PF14982)   
Domain families : Pfam (NCBI)pfam14982   
Conserved Domain (NCBI)FAM229A
DMDM Disease mutations100128071
Blocks (Seattle)FAM229A
SuperfamilyH3BQW9
Human Protein AtlasENSG00000225828
Peptide AtlasH3BQW9
IPIIPI00742847   
Protein Interaction databases
DIP (DOE-UCLA)H3BQW9
IntAct (EBI)H3BQW9
FunCoupENSG00000225828
BioGRIDFAM229A
STRING (EMBL)FAM229A
ZODIACFAM229A
Ontologies - Pathways
QuickGOH3BQW9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM229A
Atlas of Cancer Signalling NetworkFAM229A
Wikipedia pathwaysFAM229A
Orthology - Evolution
OrthoDB100128071
GeneTree (enSembl)ENSG00000225828
Phylogenetic Trees/Animal Genes : TreeFamFAM229A
HOVERGENH3BQW9
HOGENOMH3BQW9
Homologs : HomoloGeneFAM229A
Homology/Alignments : Family Browser (UCSC)FAM229A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM229A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM229A
dbVarFAM229A
ClinVarFAM229A
1000_GenomesFAM229A 
Exome Variant ServerFAM229A
ExAC (Exome Aggregation Consortium)FAM229A (select the gene name)
Genetic variants : HAPMAP100128071
Genomic Variants (DGV)FAM229A [DGVbeta]
DECIPHERFAM229A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM229A 
Mutations
ICGC Data PortalFAM229A 
TCGA Data PortalFAM229A 
Broad Tumor PortalFAM229A
OASIS PortalFAM229A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM229A
BioMutasearch FAM229A
DgiDB (Drug Gene Interaction Database)FAM229A
DoCM (Curated mutations)FAM229A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM229A (select a term)
intoGenFAM229A
Cancer3DFAM229A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM229A
Genetic Testing Registry FAM229A
NextProtH3BQW9 [Medical]
TSGene100128071
GENETestsFAM229A
Target ValidationFAM229A
Huge Navigator FAM229A [HugePedia]
snp3D : Map Gene to Disease100128071
BioCentury BCIQFAM229A
ClinGenFAM229A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128071
Chemical/Pharm GKB GenePA166049148
Clinical trialFAM229A
Miscellaneous
canSAR (ICR)FAM229A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM229A
EVEXFAM229A
GoPubMedFAM229A
iHOPFAM229A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:57 CEST 2017

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