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FAM229B (family with sequence similarity 229 member B)

Identity

Alias_namesC6orf225
chromosome 6 open reading frame 225
family with sequence similarity 229, member B
Alias_symbol (synonym)DKFZp586F0922
LOC619208
Other alias
HGNC (Hugo) FAM229B
LocusID (NCBI) 619208
Atlas_Id 63170
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 112087471 and ends at 112102790 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM229B   33858
Cards
Entrez_Gene (NCBI)FAM229B  619208  family with sequence similarity 229 member B
AliasesC6orf225
GeneCards (Weizmann)FAM229B
Ensembl hg19 (Hinxton)ENSG00000203778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203778 [Gene_View]  ENSG00000203778 [Sequence]  chr6:112087471-112102790 [Contig_View]  FAM229B [Vega]
ICGC DataPortalENSG00000203778
TCGA cBioPortalFAM229B
AceView (NCBI)FAM229B
Genatlas (Paris)FAM229B
WikiGenes619208
SOURCE (Princeton)FAM229B
Genetics Home Reference (NIH)FAM229B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM229B  -     chr6:112087471-112102790 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM229B  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblFAM229B - 6q21 [CytoView hg19]  FAM229B - 6q21 [CytoView hg38]
Mapping of homologs : NCBIFAM229B [Mapview hg19]  FAM229B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL049461 BC044912 BF110308
RefSeq transcript (Entrez)NM_001033564
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM229B
Cluster EST : UnigeneHs.591340 [ NCBI ]
CGAP (NCI)Hs.591340
Alternative Splicing GalleryENSG00000203778
Gene ExpressionFAM229B [ NCBI-GEO ]   FAM229B [ EBI - ARRAY_EXPRESS ]   FAM229B [ SEEK ]   FAM229B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM229B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)619208
GTEX Portal (Tissue expression)FAM229B
Human Protein AtlasENSG00000203778-FAM229B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0N7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0N7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0N7
Splice isoforms : SwissVarQ4G0N7
PhosPhoSitePlusQ4G0N7
Domains : Interpro (EBI)FAM229   
Domain families : Pfam (Sanger)UPF0731 (PF14982)   
Domain families : Pfam (NCBI)pfam14982   
Conserved Domain (NCBI)FAM229B
DMDM Disease mutations619208
Blocks (Seattle)FAM229B
SuperfamilyQ4G0N7
Human Protein Atlas [tissue]ENSG00000203778-FAM229B [tissue]
Peptide AtlasQ4G0N7
IPIIPI00647653   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0N7
IntAct (EBI)Q4G0N7
FunCoupENSG00000203778
BioGRIDFAM229B
STRING (EMBL)FAM229B
ZODIACFAM229B
Ontologies - Pathways
QuickGOQ4G0N7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM229B
Atlas of Cancer Signalling NetworkFAM229B
Wikipedia pathwaysFAM229B
Orthology - Evolution
OrthoDB619208
GeneTree (enSembl)ENSG00000203778
Phylogenetic Trees/Animal Genes : TreeFamFAM229B
HOVERGENQ4G0N7
HOGENOMQ4G0N7
Homologs : HomoloGeneFAM229B
Homology/Alignments : Family Browser (UCSC)FAM229B
Gene fusions - Rearrangements
Fusion : QuiverFAM229B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM229B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM229B
dbVarFAM229B
ClinVarFAM229B
1000_GenomesFAM229B 
Exome Variant ServerFAM229B
ExAC (Exome Aggregation Consortium)ENSG00000203778
GNOMAD BrowserENSG00000203778
Varsome BrowserFAM229B
Genetic variants : HAPMAP619208
Genomic Variants (DGV)FAM229B [DGVbeta]
DECIPHERFAM229B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM229B 
Mutations
ICGC Data PortalFAM229B 
TCGA Data PortalFAM229B 
Broad Tumor PortalFAM229B
OASIS PortalFAM229B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM229B
BioMutasearch FAM229B
DgiDB (Drug Gene Interaction Database)FAM229B
DoCM (Curated mutations)FAM229B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM229B (select a term)
intoGenFAM229B
Cancer3DFAM229B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM229B
MedgenFAM229B
Genetic Testing Registry FAM229B
NextProtQ4G0N7 [Medical]
TSGene619208
GENETestsFAM229B
Target ValidationFAM229B
Huge Navigator FAM229B [HugePedia]
snp3D : Map Gene to Disease619208
BioCentury BCIQFAM229B
ClinGenFAM229B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD619208
Chemical/Pharm GKB GenePA162380460
Clinical trialFAM229B
Miscellaneous
canSAR (ICR)FAM229B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM229B
EVEXFAM229B
GoPubMedFAM229B
iHOPFAM229B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:45:11 CEST 2018

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