Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM231C (family with sequence similarity 231 member C)

Identity

Alias_namesfamily with sequence similarity 231, member C
Other alias-
HGNC (Hugo) FAM231C
LocusID (NCBI) 729587
Atlas_Id 77762
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16673003 and ends at 16673657 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM231C   49508
Cards
Entrez_Gene (NCBI)FAM231C  729587  family with sequence similarity 231 member C
Aliases
GeneCards (Weizmann)FAM231C
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:16673003-16673657 [Contig_View]  FAM231C [Vega]
TCGA cBioPortalFAM231C
AceView (NCBI)FAM231C
Genatlas (Paris)FAM231C
WikiGenes729587
SOURCE (Princeton)FAM231C
Genetics Home Reference (NIH)FAM231C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM231C  -     chr1:16673003-16673657 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM231C  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblFAM231C - 1p36.13 [CytoView hg19]  FAM231C - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIFAM231C [Mapview hg19]  FAM231C [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001310138
RefSeq genomic (Entrez)NC_018912 NT_187368
Consensus coding sequences : CCDS (NCBI)FAM231C
Gene ExpressionFAM231C [ NCBI-GEO ]   FAM231C [ EBI - ARRAY_EXPRESS ]   FAM231C [ SEEK ]   FAM231C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM231C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729587
GTEX Portal (Tissue expression)FAM231C
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMU5
Splice isoforms : SwissVarP0DMU5
PhosPhoSitePlusP0DMU5
Domains : Interpro (EBI)DUF4741   
Domain families : Pfam (Sanger)DUF4741 (PF15897)   
Domain families : Pfam (NCBI)pfam15897   
Conserved Domain (NCBI)FAM231C
DMDM Disease mutations729587
Blocks (Seattle)FAM231C
SuperfamilyP0DMU5
Peptide AtlasP0DMU5
Protein Interaction databases
DIP (DOE-UCLA)P0DMU5
IntAct (EBI)P0DMU5
BioGRIDFAM231C
STRING (EMBL)FAM231C
ZODIACFAM231C
Ontologies - Pathways
QuickGOP0DMU5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM231C
Atlas of Cancer Signalling NetworkFAM231C
Wikipedia pathwaysFAM231C
Orthology - Evolution
OrthoDB729587
Phylogenetic Trees/Animal Genes : TreeFamFAM231C
HOVERGENP0DMU5
HOGENOMP0DMU5
Homologs : HomoloGeneFAM231C
Homology/Alignments : Family Browser (UCSC)FAM231C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM231C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM231C
dbVarFAM231C
ClinVarFAM231C
1000_GenomesFAM231C 
Exome Variant ServerFAM231C
ExAC (Exome Aggregation Consortium)FAM231C (select the gene name)
Genetic variants : HAPMAP729587
Genomic Variants (DGV)FAM231C [DGVbeta]
DECIPHERFAM231C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM231C 
Mutations
ICGC Data PortalFAM231C 
TCGA Data PortalFAM231C 
Broad Tumor PortalFAM231C
OASIS PortalFAM231C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM231C
BioMutasearch FAM231C
DgiDB (Drug Gene Interaction Database)FAM231C
DoCM (Curated mutations)FAM231C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM231C (select a term)
intoGenFAM231C
Cancer3DFAM231C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM231C
Genetic Testing Registry FAM231C
NextProtP0DMU5 [Medical]
TSGene729587
GENETestsFAM231C
Target ValidationFAM231C
Huge Navigator FAM231C [HugePedia]
snp3D : Map Gene to Disease729587
BioCentury BCIQFAM231C
ClinGenFAM231C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729587
Chemical/Pharm GKB GenePA166123687
Clinical trialFAM231C
Miscellaneous
canSAR (ICR)FAM231C (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM231C
EVEXFAM231C
GoPubMedFAM231C
iHOPFAM231C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:07:58 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.