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FAM234A (family with sequence similarity 234 member A)

Identity

Alias_namesC16orf9
ITFG3
chromosome 16 open reading frame 9
integrin alpha FG-GAP repeat containing 3
family with sequence similarity 234, member A
Alias_symbol (synonym)DKFZP761D0211
FLJ32603
Other aliasgs19
HGNC (Hugo) FAM234A
LocusID (NCBI) 83986
Atlas_Id 77744
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 234546 and ends at 266125 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AXIN1 (16p13.3) / FAM234A (16p13.3)FAM234A (16p13.3) / LUC7L (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM234A   14163
Cards
Entrez_Gene (NCBI)FAM234A  83986  family with sequence similarity 234 member A
AliasesC16orf9; ITFG3; gs19
GeneCards (Weizmann)FAM234A
Ensembl hg19 (Hinxton)ENSG00000167930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167930 [Gene_View]  chr16:234546-266125 [Contig_View]  FAM234A [Vega]
ICGC DataPortalENSG00000167930
TCGA cBioPortalFAM234A
AceView (NCBI)FAM234A
Genatlas (Paris)FAM234A
WikiGenes83986
SOURCE (Princeton)FAM234A
Genetics Home Reference (NIH)FAM234A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM234A  -     chr16:234546-266125 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM234A  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblFAM234A - 16p13.3 [CytoView hg19]  FAM234A - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIFAM234A [Mapview hg19]  FAM234A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057165 AK294581 AK310766 AL136542 AM393647
RefSeq transcript (Entrez)NM_001284497 NM_032039
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM234A
Cluster EST : UnigeneHs.513225 [ NCBI ]
CGAP (NCI)Hs.513225
Alternative Splicing GalleryENSG00000167930
Gene ExpressionFAM234A [ NCBI-GEO ]   FAM234A [ EBI - ARRAY_EXPRESS ]   FAM234A [ SEEK ]   FAM234A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM234A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83986
GTEX Portal (Tissue expression)FAM234A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0X4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0X4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0X4
Splice isoforms : SwissVarQ9H0X4
PhosPhoSitePlusQ9H0X4
Domains : Interpro (EBI)Quinoprotein_ADH-like_supfam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM234A
DMDM Disease mutations83986
Blocks (Seattle)FAM234A
SuperfamilyQ9H0X4
Human Protein AtlasENSG00000167930
Peptide AtlasQ9H0X4
HPRD12677
IPIIPI00845516   IPI00396658   IPI00658094   IPI00045487   IPI00657824   IPI00464981   IPI00658142   IPI00658207   IPI00658177   IPI00853019   IPI00852802   IPI00852869   IPI00852655   IPI00852729   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0X4
IntAct (EBI)Q9H0X4
FunCoupENSG00000167930
BioGRIDFAM234A
STRING (EMBL)FAM234A
ZODIACFAM234A
Ontologies - Pathways
QuickGOQ9H0X4
Ontology : AmiGOmolecular_function  biological_process  cell surface  integral component of membrane  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  cell surface  integral component of membrane  extracellular exosome  
NDEx NetworkFAM234A
Atlas of Cancer Signalling NetworkFAM234A
Wikipedia pathwaysFAM234A
Orthology - Evolution
OrthoDB83986
GeneTree (enSembl)ENSG00000167930
Phylogenetic Trees/Animal Genes : TreeFamFAM234A
HOVERGENQ9H0X4
HOGENOMQ9H0X4
Homologs : HomoloGeneFAM234A
Homology/Alignments : Family Browser (UCSC)FAM234A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM234A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM234A
dbVarFAM234A
ClinVarFAM234A
1000_GenomesFAM234A 
Exome Variant ServerFAM234A
ExAC (Exome Aggregation Consortium)FAM234A (select the gene name)
Genetic variants : HAPMAP83986
Genomic Variants (DGV)FAM234A [DGVbeta]
DECIPHERFAM234A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM234A 
Mutations
ICGC Data PortalFAM234A 
TCGA Data PortalFAM234A 
Broad Tumor PortalFAM234A
OASIS PortalFAM234A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM234A
BioMutasearch FAM234A
DgiDB (Drug Gene Interaction Database)FAM234A
DoCM (Curated mutations)FAM234A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM234A (select a term)
intoGenFAM234A
Cancer3DFAM234A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM234A
Genetic Testing Registry FAM234A
NextProtQ9H0X4 [Medical]
TSGene83986
GENETestsFAM234A
Huge Navigator FAM234A [HugePedia]
snp3D : Map Gene to Disease83986
BioCentury BCIQFAM234A
ClinGenFAM234A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83986
Chemical/Pharm GKB GenePA25564
Clinical trialFAM234A
Miscellaneous
canSAR (ICR)FAM234A (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM234A
EVEXFAM234A
GoPubMedFAM234A
iHOPFAM234A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 11:11:15 CEST 2017

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