Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FAM238A (family with sequence similarity 238 member A (non-protein coding))

Identity

Alias_namesC10orf50
NCRNA00264
LINC00264
chromosome 10 open reading frame 50
non-protein coding RNA 264
long intergenic non-protein coding RNA 264
Alias_symbol (synonym)bA128B16.2
Other alias
HGNC (Hugo) FAM238A
LocusID (NCBI) 645528
Atlas_Id 80223
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 26589865 and ends at 26594322 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FAM238A   17776
Cards
Entrez_Gene (NCBI)FAM238A  645528  family with sequence similarity 238 member A (non-protein coding)
AliasesC10orf50; LINC00264; NCRNA00264; bA128B16.2
GeneCards (Weizmann)FAM238A
Ensembl hg19 (Hinxton)ENSG00000233261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233261 [Gene_View]  chr10:26589865-26594322 [Contig_View]  FAM238A [Vega]
ICGC DataPortalENSG00000233261
TCGA cBioPortalFAM238A
AceView (NCBI)FAM238A
Genatlas (Paris)FAM238A
WikiGenes645528
SOURCE (Princeton)FAM238A
Genetics Home Reference (NIH)FAM238A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM238A  -     chr10:26589865-26594322 +  10p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM238A  -     10p12.1   [Description]    (hg19-Feb_2009)
EnsemblFAM238A - 10p12.1 [CytoView hg19]  FAM238A - 10p12.1 [CytoView hg38]
Mapping of homologs : NCBIFAM238A [Mapview hg19]  FAM238A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038537
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM238A
Cluster EST : UnigeneHs.634511 [ NCBI ]
CGAP (NCI)Hs.634511
Alternative Splicing GalleryENSG00000233261
Gene ExpressionFAM238A [ NCBI-GEO ]   FAM238A [ EBI - ARRAY_EXPRESS ]   FAM238A [ SEEK ]   FAM238A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM238A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)645528
GTEX Portal (Tissue expression)FAM238A
Human Protein AtlasENSG00000233261-FAM238A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM238A
DMDM Disease mutations645528
Blocks (Seattle)FAM238A
Human Protein Atlas [tissue]ENSG00000233261-FAM238A [tissue]
Protein Interaction databases
FunCoupENSG00000233261
BioGRIDFAM238A
STRING (EMBL)FAM238A
ZODIACFAM238A
Ontologies - Pathways
Huge Navigator FAM238A [HugePedia]
snp3D : Map Gene to Disease645528
BioCentury BCIQFAM238A
ClinGenFAM238A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645528
Chemical/Pharm GKB GenePA165548992
Clinical trialFAM238A
Miscellaneous
canSAR (ICR)FAM238A (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM238A
EVEXFAM238A
GoPubMedFAM238A
iHOPFAM238A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:18:26 CET 2018
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