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FAM241A (family with sequence similarity 241 member A)

Identity

Alias_namesC4orf32
chromosome 4 open reading frame 32
Alias_symbol (synonym)FLJ39370
Other alias
HGNC (Hugo) FAM241A
LocusID (NCBI) 132720
Atlas_Id 78971
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 112145397 and ends at 112189081 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)FAM241A   26813
Cards
Entrez_Gene (NCBI)FAM241A  132720  family with sequence similarity 241 member A
AliasesC4orf32
GeneCards (Weizmann)FAM241A
Ensembl hg19 (Hinxton)ENSG00000174749 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174749 [Gene_View]  ENSG00000174749 [Sequence]  chr4:112145397-112189081 [Contig_View]  FAM241A [Vega]
ICGC DataPortalENSG00000174749
TCGA cBioPortalFAM241A
AceView (NCBI)FAM241A
Genatlas (Paris)FAM241A
WikiGenes132720
SOURCE (Princeton)FAM241A
Genetics Home Reference (NIH)FAM241A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM241A  -     chr4:112145397-112189081 +  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM241A  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblFAM241A - 4q25 [CytoView hg19]  FAM241A - 4q25 [CytoView hg38]
Mapping of homologs : NCBIFAM241A [Mapview hg19]  FAM241A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI634637 AK096689 BC022534 BC041964 BI463956
RefSeq transcript (Entrez)NM_152400
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM241A
Cluster EST : UnigeneHs.23439 [ NCBI ]
CGAP (NCI)Hs.23439
Alternative Splicing GalleryENSG00000174749
Gene ExpressionFAM241A [ NCBI-GEO ]   FAM241A [ EBI - ARRAY_EXPRESS ]   FAM241A [ SEEK ]   FAM241A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM241A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132720
GTEX Portal (Tissue expression)FAM241A
Human Protein AtlasENSG00000174749-FAM241A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8J7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8J7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8J7
Splice isoforms : SwissVarQ8N8J7
PhosPhoSitePlusQ8N8J7
Domains : Interpro (EBI)DUF4605   
Domain families : Pfam (Sanger)DUF4605 (PF15378)   
Domain families : Pfam (NCBI)pfam15378   
Conserved Domain (NCBI)FAM241A
DMDM Disease mutations132720
Blocks (Seattle)FAM241A
SuperfamilyQ8N8J7
Human Protein Atlas [tissue]ENSG00000174749-FAM241A [tissue]
Peptide AtlasQ8N8J7
IPIIPI00167492   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8J7
IntAct (EBI)Q8N8J7
FunCoupENSG00000174749
BioGRIDFAM241A
STRING (EMBL)FAM241A
ZODIACFAM241A
Ontologies - Pathways
QuickGOQ8N8J7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM241A
Atlas of Cancer Signalling NetworkFAM241A
Wikipedia pathwaysFAM241A
Orthology - Evolution
OrthoDB132720
GeneTree (enSembl)ENSG00000174749
Phylogenetic Trees/Animal Genes : TreeFamFAM241A
HOVERGENQ8N8J7
HOGENOMQ8N8J7
Homologs : HomoloGeneFAM241A
Homology/Alignments : Family Browser (UCSC)FAM241A
Gene fusions - Rearrangements
Fusion : QuiverFAM241A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM241A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM241A
dbVarFAM241A
ClinVarFAM241A
1000_GenomesFAM241A 
Exome Variant ServerFAM241A
ExAC (Exome Aggregation Consortium)ENSG00000174749
GNOMAD BrowserENSG00000174749
Varsome BrowserFAM241A
Genetic variants : HAPMAP132720
Genomic Variants (DGV)FAM241A [DGVbeta]
DECIPHERFAM241A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM241A 
Mutations
ICGC Data PortalFAM241A 
TCGA Data PortalFAM241A 
Broad Tumor PortalFAM241A
OASIS PortalFAM241A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM241A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM241A
DgiDB (Drug Gene Interaction Database)FAM241A
DoCM (Curated mutations)FAM241A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM241A (select a term)
intoGenFAM241A
Cancer3DFAM241A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM241A
MedgenFAM241A
Genetic Testing Registry FAM241A
NextProtQ8N8J7 [Medical]
TSGene132720
GENETestsFAM241A
Target ValidationFAM241A
Huge Navigator FAM241A [HugePedia]
snp3D : Map Gene to Disease132720
BioCentury BCIQFAM241A
ClinGenFAM241A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132720
Chemical/Pharm GKB GenePA162379734
Clinical trialFAM241A
Miscellaneous
canSAR (ICR)FAM241A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM241A
EVEXFAM241A
GoPubMedFAM241A
iHOPFAM241A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:45:16 CEST 2018

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