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FAM25A (family with sequence similarity 25 member A)

Identity

Alias_namesfamily with sequence similarity 25, member A
Alias_symbol (synonym)bA96C23.5
Other alias
HGNC (Hugo) FAM25A
LocusID (NCBI) 643161
Atlas_Id 63178
Location 10q23.2  [Link to chromosome band 10q23]
Location_base_pair Starts at 87020289 and ends at 87024730 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM25A   23436
Cards
Entrez_Gene (NCBI)FAM25A  643161  family with sequence similarity 25 member A
AliasesbA96C23.5
GeneCards (Weizmann)FAM25A
Ensembl hg19 (Hinxton)ENSG00000188100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188100 [Gene_View]  chr10:87020289-87024730 [Contig_View]  FAM25A [Vega]
ICGC DataPortalENSG00000188100
TCGA cBioPortalFAM25A
AceView (NCBI)FAM25A
Genatlas (Paris)FAM25A
WikiGenes643161
SOURCE (Princeton)FAM25A
Genetics Home Reference (NIH)FAM25A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM25A  -     chr10:87020289-87024730 +  10q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM25A  -     10q23.2   [Description]    (hg19-Feb_2009)
EnsemblFAM25A - 10q23.2 [CytoView hg19]  FAM25A - 10q23.2 [CytoView hg38]
Mapping of homologs : NCBIFAM25A [Mapview hg19]  FAM25A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC171878 BC171915 BQ013919
RefSeq transcript (Entrez)NM_001146157
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM25A
Cluster EST : UnigeneHs.729945 [ NCBI ]
CGAP (NCI)Hs.729945
Alternative Splicing GalleryENSG00000188100
Gene ExpressionFAM25A [ NCBI-GEO ]   FAM25A [ EBI - ARRAY_EXPRESS ]   FAM25A [ SEEK ]   FAM25A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM25A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643161
GTEX Portal (Tissue expression)FAM25A
Protein : pattern, domain, 3D structure
UniProt/SwissProtB3EWG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB3EWG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB3EWG3
Splice isoforms : SwissVarB3EWG3
PhosPhoSitePlusB3EWG3
Domains : Interpro (EBI)FAM25   
Domain families : Pfam (Sanger)FAM25 (PF15825)   
Domain families : Pfam (NCBI)pfam15825   
Conserved Domain (NCBI)FAM25A
DMDM Disease mutations643161
Blocks (Seattle)FAM25A
SuperfamilyB3EWG3
Human Protein AtlasENSG00000188100
Peptide AtlasB3EWG3
Protein Interaction databases
DIP (DOE-UCLA)B3EWG3
IntAct (EBI)B3EWG3
FunCoupENSG00000188100
BioGRIDFAM25A
STRING (EMBL)FAM25A
ZODIACFAM25A
Ontologies - Pathways
QuickGOB3EWG3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM25A
Atlas of Cancer Signalling NetworkFAM25A
Wikipedia pathwaysFAM25A
Orthology - Evolution
OrthoDB643161
GeneTree (enSembl)ENSG00000188100
Phylogenetic Trees/Animal Genes : TreeFamFAM25A
HOVERGENB3EWG3
HOGENOMB3EWG3
Homologs : HomoloGeneFAM25A
Homology/Alignments : Family Browser (UCSC)FAM25A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM25A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM25A
dbVarFAM25A
ClinVarFAM25A
1000_GenomesFAM25A 
Exome Variant ServerFAM25A
ExAC (Exome Aggregation Consortium)FAM25A (select the gene name)
Genetic variants : HAPMAP643161
Genomic Variants (DGV)FAM25A [DGVbeta]
DECIPHERFAM25A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM25A 
Mutations
ICGC Data PortalFAM25A 
TCGA Data PortalFAM25A 
Broad Tumor PortalFAM25A
OASIS PortalFAM25A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM25A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM25A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM25A
DgiDB (Drug Gene Interaction Database)FAM25A
DoCM (Curated mutations)FAM25A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM25A (select a term)
intoGenFAM25A
Cancer3DFAM25A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM25A
Genetic Testing Registry FAM25A
NextProtB3EWG3 [Medical]
TSGene643161
GENETestsFAM25A
Target ValidationFAM25A
Huge Navigator FAM25A [HugePedia]
snp3D : Map Gene to Disease643161
BioCentury BCIQFAM25A
ClinGenFAM25A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643161
Chemical/Pharm GKB GenePA134895337
Clinical trialFAM25A
Miscellaneous
canSAR (ICR)FAM25A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM25A
EVEXFAM25A
GoPubMedFAM25A
iHOPFAM25A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:27 CEST 2017

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