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FAM25A (family with sequence similarity 25 member A)

Identity

Alias (NCBI)bA96C23.5
HGNC (Hugo) FAM25A
HGNC Alias symbbA96C23.5
HGNC Previous namefamily with sequence similarity 25, member A
LocusID (NCBI) 643161
Atlas_Id 63178
Location 10q23.2  [Link to chromosome band 10q23]
Location_base_pair Starts at 87020289 and ends at 87024730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)FAM25A   23436
Cards
Entrez_Gene (NCBI)FAM25A    family with sequence similarity 25 member A
AliasesbA96C23.5
GeneCards (Weizmann)FAM25A
Ensembl hg19 (Hinxton)ENSG00000188100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188100 [Gene_View]  ENSG00000188100 [Sequence]  chr10:87020289-87024730 [Contig_View]  FAM25A [Vega]
ICGC DataPortalENSG00000188100
TCGA cBioPortalFAM25A
AceView (NCBI)FAM25A
Genatlas (Paris)FAM25A
SOURCE (Princeton)FAM25A
Genetics Home Reference (NIH)FAM25A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM25A  -     chr10:87020289-87024730 +  10q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM25A  -     10q23.2   [Description]    (hg19-Feb_2009)
GoldenPathFAM25A - 10q23.2 [CytoView hg19]  FAM25A - 10q23.2 [CytoView hg38]
ImmunoBaseENSG00000188100
genome Data Viewer NCBIFAM25A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC171878 BC171915 BQ013919
RefSeq transcript (Entrez)NM_001146157
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM25A
Alternative Splicing GalleryENSG00000188100
Gene ExpressionFAM25A [ NCBI-GEO ]   FAM25A [ EBI - ARRAY_EXPRESS ]   FAM25A [ SEEK ]   FAM25A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM25A [ Firebrowse - Broad ]
GenevisibleExpression of FAM25A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643161
GTEX Portal (Tissue expression)FAM25A
Human Protein AtlasENSG00000188100-FAM25A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB3EWG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB3EWG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB3EWG3
Splice isoforms : SwissVarB3EWG3
PhosPhoSitePlusB3EWG3
Domains : Interpro (EBI)FAM25   
Domain families : Pfam (Sanger)FAM25 (PF15825)   
Domain families : Pfam (NCBI)pfam15825   
Conserved Domain (NCBI)FAM25A
Blocks (Seattle)FAM25A
SuperfamilyB3EWG3
Human Protein Atlas [tissue]ENSG00000188100-FAM25A [tissue]
Peptide AtlasB3EWG3
Protein Interaction databases
DIP (DOE-UCLA)B3EWG3
IntAct (EBI)B3EWG3
BioGRIDFAM25A
STRING (EMBL)FAM25A
ZODIACFAM25A
Ontologies - Pathways
QuickGOB3EWG3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM25A
Atlas of Cancer Signalling NetworkFAM25A
Wikipedia pathwaysFAM25A
Orthology - Evolution
OrthoDB643161
GeneTree (enSembl)ENSG00000188100
Phylogenetic Trees/Animal Genes : TreeFamFAM25A
HOGENOMB3EWG3
Homologs : HomoloGeneFAM25A
Homology/Alignments : Family Browser (UCSC)FAM25A
Gene fusions - Rearrangements
Fusion : QuiverFAM25A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM25A [hg38]
dbVarFAM25A
ClinVarFAM25A
MonarchFAM25A
1000_GenomesFAM25A 
Exome Variant ServerFAM25A
GNOMAD BrowserENSG00000188100
Varsome BrowserFAM25A
Genomic Variants (DGV)FAM25A [DGVbeta]
DECIPHERFAM25A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM25A 
Mutations
ICGC Data PortalFAM25A 
TCGA Data PortalFAM25A 
Broad Tumor PortalFAM25A
OASIS PortalFAM25A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM25A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM25A
Mutations and Diseases : HGMDFAM25A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM25A
DgiDB (Drug Gene Interaction Database)FAM25A
DoCM (Curated mutations)FAM25A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM25A (select a term)
intoGenFAM25A
Cancer3DFAM25A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM25A
MedgenFAM25A
Genetic Testing Registry FAM25A
NextProtB3EWG3 [Medical]
GENETestsFAM25A
Target ValidationFAM25A
Huge Navigator FAM25A [HugePedia]
ClinGenFAM25A
Clinical trials, drugs, therapy
MyCancerGenomeFAM25A
Protein Interactions : CTD
Pharm GKB GenePA134895337
Clinical trialFAM25A
Miscellaneous
canSAR (ICR)FAM25A (select the gene name)
HarmonizomeFAM25A
DataMed IndexFAM25A
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM25A
EVEXFAM25A
GoPubMedFAM25A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:54:03 CET 2020

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