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FAM25BP (protein FAM25)

Identity

Alias_namesFAM25B
family with sequence similarity 25, member B
family with sequence similarity 25, member B, pseudogene
Alias_symbol (synonym)bA144G6.8
Other aliasFAM25A
FAM25C
FAM25G
HGNC (Hugo) FAM25BP
LocusID (NCBI) 100132929
Atlas_Id 63179
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 47995340 and ends at 47999785 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM25BP   23584
Cards
Entrez_Gene (NCBI)FAM25BP  100132929  protein FAM25
AliasesFAM25A; FAM25B; FAM25C; FAM25G
GeneCards (Weizmann)FAM25BP
Ensembl hg19 (Hinxton)ENSG00000273225 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273225 [Gene_View]  chr10:47995340-47999785 [Contig_View]  FAM25BP [Vega]
ICGC DataPortalENSG00000273225
TCGA cBioPortalFAM25BP
AceView (NCBI)FAM25BP
Genatlas (Paris)FAM25BP
WikiGenes100132929
SOURCE (Princeton)FAM25BP
Genetics Home Reference (NIH)FAM25BP
Genomic and cartography
GoldenPath hg38 (UCSC)FAM25BP  -     chr10:47995340-47999785 -  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM25BP  -     10q11.22   [Description]    (hg19-Feb_2009)
EnsemblFAM25BP - 10q11.22 [CytoView hg19]  FAM25BP - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBIFAM25BP [Mapview hg19]  FAM25BP [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146968 BF062320
RefSeq transcript (Entrez)NM_001137556
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM25BP
Cluster EST : UnigeneHs.645212 [ NCBI ]
CGAP (NCI)Hs.645212
Alternative Splicing GalleryENSG00000273225
Gene ExpressionFAM25BP [ NCBI-GEO ]   FAM25BP [ EBI - ARRAY_EXPRESS ]   FAM25BP [ SEEK ]   FAM25BP [ MEM ]
Gene Expression Viewer (FireBrowse)FAM25BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132929
GTEX Portal (Tissue expression)FAM25BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtB3EWG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB3EWG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB3EWG4
Splice isoforms : SwissVarB3EWG4
PhosPhoSitePlusB3EWG4
Domains : Interpro (EBI)FAM25   
Domain families : Pfam (Sanger)FAM25 (PF15825)   
Domain families : Pfam (NCBI)pfam15825   
Conserved Domain (NCBI)FAM25BP
DMDM Disease mutations100132929
Blocks (Seattle)FAM25BP
SuperfamilyB3EWG4
Human Protein AtlasENSG00000273225
Peptide AtlasB3EWG4
IPIIPI00413368   
Protein Interaction databases
DIP (DOE-UCLA)B3EWG4
IntAct (EBI)B3EWG4
FunCoupENSG00000273225
BioGRIDFAM25BP
STRING (EMBL)FAM25BP
ZODIACFAM25BP
Ontologies - Pathways
QuickGOB3EWG4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM25BP
Atlas of Cancer Signalling NetworkFAM25BP
Wikipedia pathwaysFAM25BP
Orthology - Evolution
OrthoDB100132929
GeneTree (enSembl)ENSG00000273225
Phylogenetic Trees/Animal Genes : TreeFamFAM25BP
HOVERGENB3EWG4
HOGENOMB3EWG4
Homologs : HomoloGeneFAM25BP
Homology/Alignments : Family Browser (UCSC)FAM25BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM25BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM25BP
dbVarFAM25BP
ClinVarFAM25BP
1000_GenomesFAM25BP 
Exome Variant ServerFAM25BP
ExAC (Exome Aggregation Consortium)FAM25BP (select the gene name)
Genetic variants : HAPMAP100132929
Genomic Variants (DGV)FAM25BP [DGVbeta]
DECIPHERFAM25BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM25BP 
Mutations
ICGC Data PortalFAM25BP 
TCGA Data PortalFAM25BP 
Broad Tumor PortalFAM25BP
OASIS PortalFAM25BP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM25BP
BioMutasearch FAM25BP
DgiDB (Drug Gene Interaction Database)FAM25BP
DoCM (Curated mutations)FAM25BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM25BP (select a term)
intoGenFAM25BP
Cancer3DFAM25BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM25BP
Genetic Testing Registry FAM25BP
NextProtB3EWG4 [Medical]
TSGene100132929
GENETestsFAM25BP
Target ValidationFAM25BP
Huge Navigator FAM25BP [HugePedia]
snp3D : Map Gene to Disease100132929
BioCentury BCIQFAM25BP
ClinGenFAM25BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132929
Chemical/Pharm GKB GenePA134928795
Clinical trialFAM25BP
Miscellaneous
canSAR (ICR)FAM25BP (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM25BP
EVEXFAM25BP
GoPubMedFAM25BP
iHOPFAM25BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:48:27 CEST 2017

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