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FAM25C (family with sequence similarity 25 member C)

Identity

Alias (NCBI)bA164N7.4
HGNC (Hugo) FAM25C
HGNC Alias symbbA164N7.4
HGNC Previous namefamily with sequence similarity 25, member C
LocusID (NCBI) 644054
Atlas_Id 63180
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 47487219 and ends at 47491700 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM25C   23586
Cards
Entrez_Gene (NCBI)FAM25C    family with sequence similarity 25 member C
AliasesbA164N7.4
GeneCards (Weizmann)FAM25C
Ensembl hg19 (Hinxton)ENSG00000276430 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276430 [Gene_View]  ENSG00000276430 [Sequence]  chr10:47487219-47491700 [Contig_View]  FAM25C [Vega]
ICGC DataPortalENSG00000276430
TCGA cBioPortalFAM25C
AceView (NCBI)FAM25C
Genatlas (Paris)FAM25C
SOURCE (Princeton)FAM25C
Genetics Home Reference (NIH)FAM25C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM25C  -     chr10:47487219-47491700 -  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM25C  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathFAM25C - 10q11.22 [CytoView hg19]  FAM25C - 10q11.22 [CytoView hg38]
ImmunoBaseENSG00000276430
Genome Data Viewer NCBIFAM25C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC127791 BC146955 BC146972 BC146989 BC146990
RefSeq transcript (Entrez)NM_001137548
Consensus coding sequences : CCDS (NCBI)FAM25C
Gene ExpressionFAM25C [ NCBI-GEO ]   FAM25C [ EBI - ARRAY_EXPRESS ]   FAM25C [ SEEK ]   FAM25C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM25C [ Firebrowse - Broad ]
GenevisibleExpression of FAM25C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644054
GTEX Portal (Tissue expression)FAM25C
Human Protein AtlasENSG00000276430-FAM25C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB3EWG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB3EWG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB3EWG5
PhosPhoSitePlusB3EWG5
Domains : Interpro (EBI)FAM25   
Domain families : Pfam (Sanger)FAM25 (PF15825)   
Domain families : Pfam (NCBI)pfam15825   
Conserved Domain (NCBI)FAM25C
SuperfamilyB3EWG5
AlphaFold pdb e-kbB3EWG5   
Human Protein Atlas [tissue]ENSG00000276430-FAM25C [tissue]
Protein Interaction databases
DIP (DOE-UCLA)B3EWG5
IntAct (EBI)B3EWG5
BioGRIDFAM25C
STRING (EMBL)FAM25C
ZODIACFAM25C
Ontologies - Pathways
QuickGOB3EWG5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM25C
Atlas of Cancer Signalling NetworkFAM25C
Wikipedia pathwaysFAM25C
Orthology - Evolution
OrthoDB644054
GeneTree (enSembl)ENSG00000276430
Phylogenetic Trees/Animal Genes : TreeFamFAM25C
Homologs : HomoloGeneFAM25C
Homology/Alignments : Family Browser (UCSC)FAM25C
Gene fusions - Rearrangements
Fusion : QuiverFAM25C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM25C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM25C
dbVarFAM25C
ClinVarFAM25C
MonarchFAM25C
1000_GenomesFAM25C 
Exome Variant ServerFAM25C
GNOMAD BrowserENSG00000276430
Varsome BrowserFAM25C
ACMGFAM25C variants
VarityB3EWG5
Genomic Variants (DGV)FAM25C [DGVbeta]
DECIPHERFAM25C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM25C 
Mutations
ICGC Data PortalFAM25C 
TCGA Data PortalFAM25C 
Broad Tumor PortalFAM25C
OASIS PortalFAM25C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM25C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM25C
Mutations and Diseases : HGMDFAM25C
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM25C
DgiDB (Drug Gene Interaction Database)FAM25C
DoCM (Curated mutations)FAM25C
CIViC (Clinical Interpretations of Variants in Cancer)FAM25C
Cancer3DFAM25C
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM25C
MedgenFAM25C
Genetic Testing Registry FAM25C
NextProtB3EWG5 [Medical]
GENETestsFAM25C
Target ValidationFAM25C
Huge Navigator FAM25C [HugePedia]
ClinGenFAM25C
Clinical trials, drugs, therapy
MyCancerGenomeFAM25C
Protein Interactions : CTDFAM25C
Pharm GKB GenePA134868713
PharosB3EWG5
Clinical trialFAM25C
Miscellaneous
canSAR (ICR)FAM25C
HarmonizomeFAM25C
DataMed IndexFAM25C
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM25C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:50:02 CEST 2021

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