Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM25E (family with sequence similarity 25 member E)

Identity

Alias_namesFAM25D
family with sequence similarity 25, member E
family with sequence similarity 25 member D
family with sequence similarity 25, member D
Alias_symbol (synonym)AC012044.5
bA592B15.5
Other alias
HGNC (Hugo) FAM25E
LocusID (NCBI) 643479
Atlas_Id 79246
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 45815428 and ends at 45817324 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)FAM25E   23587
Cards
Entrez_Gene (NCBI)FAM25E  643479  family with sequence similarity 25 member E
AliasesFAM25D
GeneCards (Weizmann)FAM25E
Ensembl hg19 (Hinxton)ENSG00000231122 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231122 [Gene_View]  chr10:45815428-45817324 [Contig_View]  FAM25E [Vega]
ICGC DataPortalENSG00000231122
TCGA cBioPortalFAM25E
AceView (NCBI)FAM25E
Genatlas (Paris)FAM25E
WikiGenes643479
SOURCE (Princeton)FAM25E
Genetics Home Reference (NIH)FAM25E
Genomic and cartography
GoldenPath hg38 (UCSC)FAM25E  -     chr10:45815428-45817324 -  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM25E  -     10q11.22   [Description]    (hg19-Feb_2009)
EnsemblFAM25E - 10q11.22 [CytoView hg19]  FAM25E - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBIFAM25E [Mapview hg19]  FAM25E [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI216894
RefSeq transcript (Entrez)NM_001351234
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM25E
Cluster EST : UnigeneHs.522900 [ NCBI ]
CGAP (NCI)Hs.522900
Alternative Splicing GalleryENSG00000231122
Gene ExpressionFAM25E [ NCBI-GEO ]   FAM25E [ EBI - ARRAY_EXPRESS ]   FAM25E [ SEEK ]   FAM25E [ MEM ]
Gene Expression Viewer (FireBrowse)FAM25E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643479
GTEX Portal (Tissue expression)FAM25E
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYX2
Splice isoforms : SwissVarA8MYX2
PhosPhoSitePlusA8MYX2
Domains : Interpro (EBI)FAM25   
Domain families : Pfam (Sanger)FAM25 (PF15825)   
Domain families : Pfam (NCBI)pfam15825   
Conserved Domain (NCBI)FAM25E
DMDM Disease mutations643479
Blocks (Seattle)FAM25E
SuperfamilyA8MYX2
Human Protein AtlasENSG00000231122
Peptide AtlasA8MYX2
Protein Interaction databases
DIP (DOE-UCLA)A8MYX2
IntAct (EBI)A8MYX2
FunCoupENSG00000231122
BioGRIDFAM25E
STRING (EMBL)FAM25E
ZODIACFAM25E
Ontologies - Pathways
QuickGOA8MYX2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM25E
Atlas of Cancer Signalling NetworkFAM25E
Wikipedia pathwaysFAM25E
Orthology - Evolution
OrthoDB643479
GeneTree (enSembl)ENSG00000231122
Phylogenetic Trees/Animal Genes : TreeFamFAM25E
HOVERGENA8MYX2
HOGENOMA8MYX2
Homologs : HomoloGeneFAM25E
Homology/Alignments : Family Browser (UCSC)FAM25E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM25E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM25E
dbVarFAM25E
ClinVarFAM25E
1000_GenomesFAM25E 
Exome Variant ServerFAM25E
ExAC (Exome Aggregation Consortium)FAM25E (select the gene name)
Genetic variants : HAPMAP643479
Genomic Variants (DGV)FAM25E [DGVbeta]
DECIPHERFAM25E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM25E 
Mutations
ICGC Data PortalFAM25E 
TCGA Data PortalFAM25E 
Broad Tumor PortalFAM25E
OASIS PortalFAM25E [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM25E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM25E
DgiDB (Drug Gene Interaction Database)FAM25E
DoCM (Curated mutations)FAM25E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM25E (select a term)
intoGenFAM25E
Cancer3DFAM25E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM25E
Genetic Testing Registry FAM25E
NextProtA8MYX2 [Medical]
TSGene643479
GENETestsFAM25E
Target ValidationFAM25E
Huge Navigator FAM25E [HugePedia]
snp3D : Map Gene to Disease643479
BioCentury BCIQFAM25E
ClinGenFAM25E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643479
Chemical/Pharm GKB GenePA134878442
Clinical trialFAM25E
Miscellaneous
canSAR (ICR)FAM25E (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM25E
EVEXFAM25E
GoPubMedFAM25E
iHOPFAM25E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:08:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.