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FAM26D (family with sequence similarity 26 member D)

Identity

Alias_namesC6orf78
chromosome 6 open reading frame 78
family with sequence similarity 26, member D
Alias_symbol (synonym)FLJ32239
Other alias
HGNC (Hugo) FAM26D
LocusID (NCBI) 221301
Atlas_Id 63182
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116529013 and ends at 116561123 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM26D   21094
Cards
Entrez_Gene (NCBI)FAM26D  221301  family with sequence similarity 26 member D
AliasesC6orf78
GeneCards (Weizmann)FAM26D
Ensembl hg19 (Hinxton)ENSG00000164451 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164451 [Gene_View]  ENSG00000164451 [Sequence]  chr6:116529013-116561123 [Contig_View]  FAM26D [Vega]
ICGC DataPortalENSG00000164451
TCGA cBioPortalFAM26D
AceView (NCBI)FAM26D
Genatlas (Paris)FAM26D
WikiGenes221301
SOURCE (Princeton)FAM26D
Genetics Home Reference (NIH)FAM26D
Genomic and cartography
GoldenPath hg38 (UCSC)FAM26D  -     chr6:116529013-116561123 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM26D  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblFAM26D - 6q22.1 [CytoView hg19]  FAM26D - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM26D [Mapview hg19]  FAM26D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056801 AK300309 AY358252 BC057769 DA855717
RefSeq transcript (Entrez)NM_001256887 NM_001256888 NM_001256889 NM_153036
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM26D
Cluster EST : UnigeneHs.350750 [ NCBI ]
CGAP (NCI)Hs.350750
Alternative Splicing GalleryENSG00000164451
Gene ExpressionFAM26D [ NCBI-GEO ]   FAM26D [ EBI - ARRAY_EXPRESS ]   FAM26D [ SEEK ]   FAM26D [ MEM ]
Gene Expression Viewer (FireBrowse)FAM26D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221301
GTEX Portal (Tissue expression)FAM26D
Human Protein AtlasENSG00000164451-FAM26D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JW98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JW98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JW98
Splice isoforms : SwissVarQ5JW98
PhosPhoSitePlusQ5JW98
Domains : Interpro (EBI)FAM26    FAM26D   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)FAM26D
DMDM Disease mutations221301
Blocks (Seattle)FAM26D
SuperfamilyQ5JW98
Human Protein Atlas [tissue]ENSG00000164451-FAM26D [tissue]
Peptide AtlasQ5JW98
HPRD12899
IPIIPI00065530   IPI00942107   IPI00745328   IPI00604642   IPI00879722   
Protein Interaction databases
DIP (DOE-UCLA)Q5JW98
IntAct (EBI)Q5JW98
FunCoupENSG00000164451
BioGRIDFAM26D
STRING (EMBL)FAM26D
ZODIACFAM26D
Ontologies - Pathways
QuickGOQ5JW98
Ontology : AmiGOcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
NDEx NetworkFAM26D
Atlas of Cancer Signalling NetworkFAM26D
Wikipedia pathwaysFAM26D
Orthology - Evolution
OrthoDB221301
GeneTree (enSembl)ENSG00000164451
Phylogenetic Trees/Animal Genes : TreeFamFAM26D
HOVERGENQ5JW98
HOGENOMQ5JW98
Homologs : HomoloGeneFAM26D
Homology/Alignments : Family Browser (UCSC)FAM26D
Gene fusions - Rearrangements
Fusion : QuiverFAM26D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM26D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM26D
dbVarFAM26D
ClinVarFAM26D
1000_GenomesFAM26D 
Exome Variant ServerFAM26D
ExAC (Exome Aggregation Consortium)ENSG00000164451
GNOMAD BrowserENSG00000164451
Varsome BrowserFAM26D
Genetic variants : HAPMAP221301
Genomic Variants (DGV)FAM26D [DGVbeta]
DECIPHERFAM26D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM26D 
Mutations
ICGC Data PortalFAM26D 
TCGA Data PortalFAM26D 
Broad Tumor PortalFAM26D
OASIS PortalFAM26D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM26D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM26D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM26D
DgiDB (Drug Gene Interaction Database)FAM26D
DoCM (Curated mutations)FAM26D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM26D (select a term)
intoGenFAM26D
Cancer3DFAM26D(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM26D
MedgenFAM26D
Genetic Testing Registry FAM26D
NextProtQ5JW98 [Medical]
TSGene221301
GENETestsFAM26D
Target ValidationFAM26D
Huge Navigator FAM26D [HugePedia]
snp3D : Map Gene to Disease221301
BioCentury BCIQFAM26D
ClinGenFAM26D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221301
Chemical/Pharm GKB GenePA162387625
Clinical trialFAM26D
Miscellaneous
canSAR (ICR)FAM26D (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM26D
EVEXFAM26D
GoPubMedFAM26D
iHOPFAM26D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:45:18 CEST 2018

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