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FAM26F (family with sequence similarity 26 member F)

Identity

Alias_namesC6orf187
chromosome 6 open reading frame 187
family with sequence similarity 26, member F
Alias_symbol (synonym)RP1-93H18.5
OTTHUMP00000017061
OTTHUMP00000017062
dJ93H18.5
INAM
Other alias
HGNC (Hugo) FAM26F
LocusID (NCBI) 441168
Atlas_Id 63184
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116461370 and ends at 116463771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM26F (6q22.1) / FAM50A (Xq28)FAM50A (Xq28) / FAM26F (6q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM26F   33391
Cards
Entrez_Gene (NCBI)FAM26F  441168  family with sequence similarity 26 member F
AliasesC6orf187; INAM; dJ93H18.5
GeneCards (Weizmann)FAM26F
Ensembl hg19 (Hinxton)ENSG00000188820 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188820 [Gene_View]  ENSG00000188820 [Sequence]  chr6:116461370-116463771 [Contig_View]  FAM26F [Vega]
ICGC DataPortalENSG00000188820
TCGA cBioPortalFAM26F
AceView (NCBI)FAM26F
Genatlas (Paris)FAM26F
WikiGenes441168
SOURCE (Princeton)FAM26F
Genetics Home Reference (NIH)FAM26F
Genomic and cartography
GoldenPath hg38 (UCSC)FAM26F  -     chr6:116461370-116463771 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM26F  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblFAM26F - 6q22.1 [CytoView hg19]  FAM26F - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM26F [Mapview hg19]  FAM26F [Mapview hg38]
OMIM617305   
Gene and transcription
Genbank (Entrez)AF086130 AV734646 BC146842 BM704529 DN997293
RefSeq transcript (Entrez)NM_001010919 NM_001276460
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM26F
Cluster EST : UnigeneHs.381220 [ NCBI ]
CGAP (NCI)Hs.381220
Alternative Splicing GalleryENSG00000188820
Gene ExpressionFAM26F [ NCBI-GEO ]   FAM26F [ EBI - ARRAY_EXPRESS ]   FAM26F [ SEEK ]   FAM26F [ MEM ]
Gene Expression Viewer (FireBrowse)FAM26F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441168
GTEX Portal (Tissue expression)FAM26F
Human Protein AtlasENSG00000188820-FAM26F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5R3K3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5R3K3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5R3K3
Splice isoforms : SwissVarQ5R3K3
PhosPhoSitePlusQ5R3K3
Domains : Interpro (EBI)FAM26    FAM26F   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)FAM26F
DMDM Disease mutations441168
Blocks (Seattle)FAM26F
SuperfamilyQ5R3K3
Human Protein Atlas [tissue]ENSG00000188820-FAM26F [tissue]
Peptide AtlasQ5R3K3
HPRD18644
IPIIPI00455731   IPI00645128   IPI00644540   
Protein Interaction databases
DIP (DOE-UCLA)Q5R3K3
IntAct (EBI)Q5R3K3
FunCoupENSG00000188820
BioGRIDFAM26F
STRING (EMBL)FAM26F
ZODIACFAM26F
Ontologies - Pathways
QuickGOQ5R3K3
Ontology : AmiGOcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
NDEx NetworkFAM26F
Atlas of Cancer Signalling NetworkFAM26F
Wikipedia pathwaysFAM26F
Orthology - Evolution
OrthoDB441168
GeneTree (enSembl)ENSG00000188820
Phylogenetic Trees/Animal Genes : TreeFamFAM26F
HOVERGENQ5R3K3
HOGENOMQ5R3K3
Homologs : HomoloGeneFAM26F
Homology/Alignments : Family Browser (UCSC)FAM26F
Gene fusions - Rearrangements
Fusion : QuiverFAM26F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM26F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM26F
dbVarFAM26F
ClinVarFAM26F
1000_GenomesFAM26F 
Exome Variant ServerFAM26F
ExAC (Exome Aggregation Consortium)ENSG00000188820
GNOMAD BrowserENSG00000188820
Varsome BrowserFAM26F
Genetic variants : HAPMAP441168
Genomic Variants (DGV)FAM26F [DGVbeta]
DECIPHERFAM26F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM26F 
Mutations
ICGC Data PortalFAM26F 
TCGA Data PortalFAM26F 
Broad Tumor PortalFAM26F
OASIS PortalFAM26F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM26F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM26F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM26F
DgiDB (Drug Gene Interaction Database)FAM26F
DoCM (Curated mutations)FAM26F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM26F (select a term)
intoGenFAM26F
Cancer3DFAM26F(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617305   
Orphanet
DisGeNETFAM26F
MedgenFAM26F
Genetic Testing Registry FAM26F
NextProtQ5R3K3 [Medical]
TSGene441168
GENETestsFAM26F
Target ValidationFAM26F
Huge Navigator FAM26F [HugePedia]
snp3D : Map Gene to Disease441168
BioCentury BCIQFAM26F
ClinGenFAM26F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441168
Chemical/Pharm GKB GenePA162387644
Clinical trialFAM26F
Miscellaneous
canSAR (ICR)FAM26F (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM26F
EVEXFAM26F
GoPubMedFAM26F
iHOPFAM26F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:45:19 CEST 2018

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