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FAM27B (family with sequence similarity 27 member B)

Identity

Alias_namesfamily with sequence similarity 27, member B
Alias_symbol (synonym)bA12A20.3
FAM27A2
Other alias
HGNC (Hugo) FAM27B
LocusID (NCBI) 100133121
Atlas_Id 63185
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 67725483 and ends at 67726743 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM27B   23667
Cards
Entrez_Gene (NCBI)FAM27B  100133121  family with sequence similarity 27 member B
AliasesFAM27A2
GeneCards (Weizmann)FAM27B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:67725483-67726743 [Contig_View]  FAM27B [Vega]
TCGA cBioPortalFAM27B
AceView (NCBI)FAM27B
Genatlas (Paris)FAM27B
WikiGenes100133121
SOURCE (Princeton)FAM27B
Genetics Home Reference (NIH)FAM27B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM27B  -     chr9:67725483-67726743 -  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM27B  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblFAM27B - 9q21.11 [CytoView hg19]  FAM27B - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIFAM27B [Mapview hg19]  FAM27B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131029
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM27B
Cluster EST : UnigeneHs.744835 [ NCBI ]
CGAP (NCI)Hs.744835
Gene ExpressionFAM27B [ NCBI-GEO ]   FAM27B [ EBI - ARRAY_EXPRESS ]   FAM27B [ SEEK ]   FAM27B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM27B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100133121
GTEX Portal (Tissue expression)FAM27B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VT28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VT28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VT28
Splice isoforms : SwissVarQ5VT28
PhosPhoSitePlusQ5VT28
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM27B
DMDM Disease mutations100133121
Blocks (Seattle)FAM27B
SuperfamilyQ5VT28
Peptide AtlasQ5VT28
Protein Interaction databases
DIP (DOE-UCLA)Q5VT28
IntAct (EBI)Q5VT28
BioGRIDFAM27B
STRING (EMBL)FAM27B
ZODIACFAM27B
Ontologies - Pathways
QuickGOQ5VT28
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM27B
Atlas of Cancer Signalling NetworkFAM27B
Wikipedia pathwaysFAM27B
Orthology - Evolution
OrthoDB100133121
Phylogenetic Trees/Animal Genes : TreeFamFAM27B
HOVERGENQ5VT28
HOGENOMQ5VT28
Homologs : HomoloGeneFAM27B
Homology/Alignments : Family Browser (UCSC)FAM27B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM27B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM27B
dbVarFAM27B
ClinVarFAM27B
1000_GenomesFAM27B 
Exome Variant ServerFAM27B
ExAC (Exome Aggregation Consortium)FAM27B (select the gene name)
Genetic variants : HAPMAP100133121
Genomic Variants (DGV)FAM27B [DGVbeta]
DECIPHERFAM27B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM27B 
Mutations
ICGC Data PortalFAM27B 
TCGA Data PortalFAM27B 
Broad Tumor PortalFAM27B
OASIS PortalFAM27B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM27B
BioMutasearch FAM27B
DgiDB (Drug Gene Interaction Database)FAM27B
DoCM (Curated mutations)FAM27B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM27B (select a term)
intoGenFAM27B
Cancer3DFAM27B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM27B
Genetic Testing Registry FAM27B
NextProtQ5VT28 [Medical]
TSGene100133121
GENETestsFAM27B
Target ValidationFAM27B
Huge Navigator FAM27B [HugePedia]
snp3D : Map Gene to Disease100133121
BioCentury BCIQFAM27B
ClinGenFAM27B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100133121
Chemical/Pharm GKB GenePA142671890
Clinical trialFAM27B
Miscellaneous
canSAR (ICR)FAM27B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM27B
EVEXFAM27B
GoPubMedFAM27B
iHOPFAM27B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:48:28 CEST 2017

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