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FAM27C (family with sequence similarity 27 member C)

Identity

Alias_namesFAM27A
family with sequence similarity 27, member A
family with sequence similarity 27, member C
Alias_symbol (synonym)bA374M1.5
FAM27A3
bA7G23.5
FAM27A1
Other alias
HGNC (Hugo) FAM27C
LocusID (NCBI) 100132948
Atlas_Id 63186
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 67725492 and ends at 67726665 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM27C   23668
Cards
Entrez_Gene (NCBI)FAM27C  100132948  family with sequence similarity 27 member C
AliasesFAM27A; FAM27A1; FAM27A3; bA7G23.5
GeneCards (Weizmann)FAM27C
Ensembl hg19 (Hinxton)ENSG00000154537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154537 [Gene_View]  chr9:67725492-67726665 [Contig_View]  FAM27C [Vega]
ICGC DataPortalENSG00000154537
TCGA cBioPortalFAM27C
AceView (NCBI)FAM27C
Genatlas (Paris)FAM27C
WikiGenes100132948
SOURCE (Princeton)FAM27C
Genetics Home Reference (NIH)FAM27C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM27C  -     chr9:67725492-67726665 -  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM27C  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblFAM27C - 9q21.11 [CytoView hg19]  FAM27C - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIFAM27C [Mapview hg19]  FAM27C [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC002886 BC073976 BU740628 DR002944
RefSeq transcript (Entrez)NM_001024942
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM27C
Cluster EST : UnigeneHs.651534 [ NCBI ]
CGAP (NCI)Hs.651534
Alternative Splicing GalleryENSG00000154537
Gene ExpressionFAM27C [ NCBI-GEO ]   FAM27C [ EBI - ARRAY_EXPRESS ]   FAM27C [ SEEK ]   FAM27C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM27C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132948
GTEX Portal (Tissue expression)FAM27C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VT28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VT28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VT28
Splice isoforms : SwissVarQ5VT28
PhosPhoSitePlusQ5VT28
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM27C
DMDM Disease mutations100132948
Blocks (Seattle)FAM27C
SuperfamilyQ5VT28
Human Protein AtlasENSG00000154537
Peptide AtlasQ5VT28
IPIIPI00030509   
Protein Interaction databases
DIP (DOE-UCLA)Q5VT28
IntAct (EBI)Q5VT28
FunCoupENSG00000154537
BioGRIDFAM27C
STRING (EMBL)FAM27C
ZODIACFAM27C
Ontologies - Pathways
QuickGOQ5VT28
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM27C
Atlas of Cancer Signalling NetworkFAM27C
Wikipedia pathwaysFAM27C
Orthology - Evolution
OrthoDB100132948
GeneTree (enSembl)ENSG00000154537
Phylogenetic Trees/Animal Genes : TreeFamFAM27C
HOVERGENQ5VT28
HOGENOMQ5VT28
Homologs : HomoloGeneFAM27C
Homology/Alignments : Family Browser (UCSC)FAM27C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM27C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM27C
dbVarFAM27C
ClinVarFAM27C
1000_GenomesFAM27C 
Exome Variant ServerFAM27C
ExAC (Exome Aggregation Consortium)FAM27C (select the gene name)
Genetic variants : HAPMAP100132948
Genomic Variants (DGV)FAM27C [DGVbeta]
DECIPHERFAM27C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM27C 
Mutations
ICGC Data PortalFAM27C 
TCGA Data PortalFAM27C 
Broad Tumor PortalFAM27C
OASIS PortalFAM27C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM27C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM27C
BioMutasearch FAM27C
DgiDB (Drug Gene Interaction Database)FAM27C
DoCM (Curated mutations)FAM27C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM27C (select a term)
intoGenFAM27C
Cancer3DFAM27C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM27C
Genetic Testing Registry FAM27C
NextProtQ5VT28 [Medical]
TSGene100132948
GENETestsFAM27C
Target ValidationFAM27C
Huge Navigator FAM27C [HugePedia]
snp3D : Map Gene to Disease100132948
BioCentury BCIQFAM27C
ClinGenFAM27C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132948
Chemical/Pharm GKB GenePA142671891
Clinical trialFAM27C
Miscellaneous
canSAR (ICR)FAM27C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM27C
EVEXFAM27C
GoPubMedFAM27C
iHOPFAM27C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:28 CEST 2017

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