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FAM27E3 (family with sequence similarity 27 member E3)

Identity

Alias_namesfamily with sequence similarity 27, member E3
Alias_symbol (synonym)MGC42630
Other alias-
HGNC (Hugo) FAM27E3
LocusID (NCBI) 100131997
Atlas_Id 63187
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 67717498 and ends at 67719179 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM27E3   28655
Cards
Entrez_Gene (NCBI)FAM27E3  100131997  family with sequence similarity 27 member E3
Aliases
GeneCards (Weizmann)FAM27E3
Ensembl hg19 (Hinxton)ENSG00000274026 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274026 [Gene_View]  chr9:67717498-67719179 [Contig_View]  FAM27E3 [Vega]
ICGC DataPortalENSG00000274026
TCGA cBioPortalFAM27E3
AceView (NCBI)FAM27E3
Genatlas (Paris)FAM27E3
WikiGenes100131997
SOURCE (Princeton)FAM27E3
Genetics Home Reference (NIH)FAM27E3
Genomic and cartography
GoldenPath hg38 (UCSC)FAM27E3  -     chr9:67717498-67719179 -  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM27E3  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblFAM27E3 - 9q21.11 [CytoView hg19]  FAM27E3 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIFAM27E3 [Mapview hg19]  FAM27E3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC032035 BC044751 BC119675 BC127258 BC148261
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM27E3
Cluster EST : UnigeneHs.651656 [ NCBI ]
CGAP (NCI)Hs.651656
Alternative Splicing GalleryENSG00000274026
Gene ExpressionFAM27E3 [ NCBI-GEO ]   FAM27E3 [ EBI - ARRAY_EXPRESS ]   FAM27E3 [ SEEK ]   FAM27E3 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM27E3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131997
GTEX Portal (Tissue expression)FAM27E3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08E93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08E93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08E93
Splice isoforms : SwissVarQ08E93
PhosPhoSitePlusQ08E93
Domains : Interpro (EBI)FAM27D/FAM27E   
Domain families : Pfam (Sanger)FAM27 (PF15832)   
Domain families : Pfam (NCBI)pfam15832   
Conserved Domain (NCBI)FAM27E3
DMDM Disease mutations100131997
Blocks (Seattle)FAM27E3
SuperfamilyQ08E93
Human Protein AtlasENSG00000274026
Peptide AtlasQ08E93
IPIIPI00816781   
Protein Interaction databases
DIP (DOE-UCLA)Q08E93
IntAct (EBI)Q08E93
FunCoupENSG00000274026
BioGRIDFAM27E3
STRING (EMBL)FAM27E3
ZODIACFAM27E3
Ontologies - Pathways
QuickGOQ08E93
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM27E3
Atlas of Cancer Signalling NetworkFAM27E3
Wikipedia pathwaysFAM27E3
Orthology - Evolution
OrthoDB100131997
GeneTree (enSembl)ENSG00000274026
Phylogenetic Trees/Animal Genes : TreeFamFAM27E3
HOVERGENQ08E93
HOGENOMQ08E93
Homologs : HomoloGeneFAM27E3
Homology/Alignments : Family Browser (UCSC)FAM27E3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM27E3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM27E3
dbVarFAM27E3
ClinVarFAM27E3
1000_GenomesFAM27E3 
Exome Variant ServerFAM27E3
ExAC (Exome Aggregation Consortium)FAM27E3 (select the gene name)
Genetic variants : HAPMAP100131997
Genomic Variants (DGV)FAM27E3 [DGVbeta]
DECIPHERFAM27E3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM27E3 
Mutations
ICGC Data PortalFAM27E3 
TCGA Data PortalFAM27E3 
Broad Tumor PortalFAM27E3
OASIS PortalFAM27E3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM27E3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM27E3
DgiDB (Drug Gene Interaction Database)FAM27E3
DoCM (Curated mutations)FAM27E3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM27E3 (select a term)
intoGenFAM27E3
Cancer3DFAM27E3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM27E3
Genetic Testing Registry FAM27E3
NextProtQ08E93 [Medical]
TSGene100131997
GENETestsFAM27E3
Target ValidationFAM27E3
Huge Navigator FAM27E3 [HugePedia]
snp3D : Map Gene to Disease100131997
BioCentury BCIQFAM27E3
ClinGenFAM27E3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131997
Chemical/Pharm GKB GenePA145148939
Clinical trialFAM27E3
Miscellaneous
canSAR (ICR)FAM27E3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM27E3
EVEXFAM27E3
GoPubMedFAM27E3
iHOPFAM27E3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:03 CEST 2017

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