Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM27E5 (family with sequence similarity E5)

Identity

Alias_namesFAM27L
family with sequence similarity 27-like
Alias_symbol (synonym)MGC35151
Other alias
HGNC (Hugo) FAM27E5
LocusID (NCBI) 284123
Atlas_Id 78174
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 21825370 and ends at 21826499 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)FAM27E5   32410
Cards
Entrez_Gene (NCBI)FAM27E5  284123  family with sequence similarity E5
AliasesFAM27L
GeneCards (Weizmann)FAM27E5
Ensembl hg19 (Hinxton)ENSG00000178130 [Gene_View]  chr17:21825370-21826499 [Contig_View]  FAM27E5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178130 [Gene_View]  chr17:21825370-21826499 [Contig_View]  FAM27E5 [Vega]
ICGC DataPortalENSG00000178130
TCGA cBioPortalFAM27E5
AceView (NCBI)FAM27E5
Genatlas (Paris)FAM27E5
WikiGenes284123
SOURCE (Princeton)FAM27E5
Genetics Home Reference (NIH)FAM27E5
Genomic and cartography
GoldenPath hg19 (UCSC)FAM27E5  -     chr17:21825370-21826499 +  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM27E5  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblFAM27E5 - 17p11.2 [CytoView hg19]  FAM27E5 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIFAM27E5 [Mapview hg19]  FAM27E5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031617 HG508834
RefSeq transcript (Entrez)NM_203392
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_024862 NW_004929406
Consensus coding sequences : CCDS (NCBI)FAM27E5
Cluster EST : UnigeneHs.348578 [ NCBI ]
CGAP (NCI)Hs.348578
Alternative Splicing GalleryENSG00000178130
Gene ExpressionFAM27E5 [ NCBI-GEO ]   FAM27E5 [ EBI - ARRAY_EXPRESS ]   FAM27E5 [ SEEK ]   FAM27E5 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM27E5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284123
GTEX Portal (Tissue expression)FAM27E5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5T8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5T8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5T8
Splice isoforms : SwissVarQ8N5T8
PhosPhoSitePlusQ8N5T8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM27E5
DMDM Disease mutations284123
Blocks (Seattle)FAM27E5
SuperfamilyQ8N5T8
Human Protein AtlasENSG00000178130
Peptide AtlasQ8N5T8
HPRD17335
IPIIPI00166913   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5T8
IntAct (EBI)Q8N5T8
FunCoupENSG00000178130
BioGRIDFAM27E5
STRING (EMBL)FAM27E5
ZODIACFAM27E5
Ontologies - Pathways
QuickGOQ8N5T8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM27E5
Atlas of Cancer Signalling NetworkFAM27E5
Wikipedia pathwaysFAM27E5
Orthology - Evolution
OrthoDB284123
GeneTree (enSembl)ENSG00000178130
Phylogenetic Trees/Animal Genes : TreeFamFAM27E5
HOVERGENQ8N5T8
HOGENOMQ8N5T8
Homologs : HomoloGeneFAM27E5
Homology/Alignments : Family Browser (UCSC)FAM27E5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM27E5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM27E5
dbVarFAM27E5
ClinVarFAM27E5
1000_GenomesFAM27E5 
Exome Variant ServerFAM27E5
ExAC (Exome Aggregation Consortium)FAM27E5 (select the gene name)
Genetic variants : HAPMAP284123
Genomic Variants (DGV)FAM27E5 [DGVbeta]
DECIPHER (Syndromes)17:21825370-21826499  ENSG00000178130
CONAN: Copy Number AnalysisFAM27E5 
Mutations
ICGC Data PortalFAM27E5 
TCGA Data PortalFAM27E5 
Broad Tumor PortalFAM27E5
OASIS PortalFAM27E5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM27E5
BioMutasearch FAM27E5
DgiDB (Drug Gene Interaction Database)FAM27E5
DoCM (Curated mutations)FAM27E5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM27E5 (select a term)
intoGenFAM27E5
Cancer3DFAM27E5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM27E5
Genetic Testing Registry FAM27E5
NextProtQ8N5T8 [Medical]
TSGene284123
GENETestsFAM27E5
Huge Navigator FAM27E5 [HugePedia]
snp3D : Map Gene to Disease284123
BioCentury BCIQFAM27E5
ClinGenFAM27E5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284123
Chemical/Pharm GKB GenePA142671892
Clinical trialFAM27E5
Miscellaneous
canSAR (ICR)FAM27E5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM27E5
EVEXFAM27E5
GoPubMedFAM27E5
iHOPFAM27E5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:07 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.