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FAM27L (family with sequence similarity 27-like)

Identity

Other alias-
HGNC (Hugo) FAM27L
LocusID (NCBI) 284123
Atlas_Id 63188
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 21825370 and ends at 21826499 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM27L   32410
Cards
Entrez_Gene (NCBI)FAM27L  284123  family with sequence similarity 27-like
Aliases
GeneCards (Weizmann)FAM27L
Ensembl hg19 (Hinxton)ENSG00000178130 [Gene_View]  chr17:21825370-21826499 [Contig_View]  FAM27L [Vega]
Ensembl hg38 (Hinxton)ENSG00000178130 [Gene_View]  chr17:21825370-21826499 [Contig_View]  FAM27L [Vega]
ICGC DataPortalENSG00000178130
TCGA cBioPortalFAM27L
AceView (NCBI)FAM27L
Genatlas (Paris)FAM27L
WikiGenes284123
SOURCE (Princeton)FAM27L
Genetics Home Reference (NIH)FAM27L
Genomic and cartography
GoldenPath hg19 (UCSC)FAM27L  -     chr17:21825370-21826499 +  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM27L  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblFAM27L - 17p11.2 [CytoView hg19]  FAM27L - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIFAM27L [Mapview hg19]  FAM27L [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031617 HG508834
RefSeq transcript (Entrez)NM_203392
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_024862 NW_004929406
Consensus coding sequences : CCDS (NCBI)FAM27L
Cluster EST : UnigeneHs.348578 [ NCBI ]
CGAP (NCI)Hs.348578
Alternative Splicing GalleryENSG00000178130
Gene ExpressionFAM27L [ NCBI-GEO ]   FAM27L [ EBI - ARRAY_EXPRESS ]   FAM27L [ SEEK ]   FAM27L [ MEM ]
Gene Expression Viewer (FireBrowse)FAM27L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284123
GTEX Portal (Tissue expression)FAM27L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5T8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5T8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5T8
Splice isoforms : SwissVarQ8N5T8
PhosPhoSitePlusQ8N5T8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM27L
DMDM Disease mutations284123
Blocks (Seattle)FAM27L
SuperfamilyQ8N5T8
Human Protein AtlasENSG00000178130
Peptide AtlasQ8N5T8
HPRD17335
IPIIPI00166913   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5T8
IntAct (EBI)Q8N5T8
FunCoupENSG00000178130
BioGRIDFAM27L
STRING (EMBL)FAM27L
ZODIACFAM27L
Ontologies - Pathways
QuickGOQ8N5T8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM27L
Atlas of Cancer Signalling NetworkFAM27L
Wikipedia pathwaysFAM27L
Orthology - Evolution
OrthoDB284123
GeneTree (enSembl)ENSG00000178130
Phylogenetic Trees/Animal Genes : TreeFamFAM27L
HOVERGENQ8N5T8
HOGENOMQ8N5T8
Homologs : HomoloGeneFAM27L
Homology/Alignments : Family Browser (UCSC)FAM27L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM27L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM27L
dbVarFAM27L
ClinVarFAM27L
1000_GenomesFAM27L 
Exome Variant ServerFAM27L
ExAC (Exome Aggregation Consortium)FAM27L (select the gene name)
Genetic variants : HAPMAP284123
Genomic Variants (DGV)FAM27L [DGVbeta]
DECIPHER (Syndromes)17:21825370-21826499  ENSG00000178130
CONAN: Copy Number AnalysisFAM27L 
Mutations
ICGC Data PortalFAM27L 
TCGA Data PortalFAM27L 
Broad Tumor PortalFAM27L
OASIS PortalFAM27L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM27L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM27L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM27L
DgiDB (Drug Gene Interaction Database)FAM27L
DoCM (Curated mutations)FAM27L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM27L (select a term)
intoGenFAM27L
Cancer3DFAM27L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM27L
Genetic Testing Registry FAM27L
NextProtQ8N5T8 [Medical]
TSGene284123
GENETestsFAM27L
Huge Navigator FAM27L [HugePedia]
snp3D : Map Gene to Disease284123
BioCentury BCIQFAM27L
ClinGenFAM27L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284123
Chemical/Pharm GKB GenePA142671892
Clinical trialFAM27L
Miscellaneous
canSAR (ICR)FAM27L (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM27L
EVEXFAM27L
GoPubMedFAM27L
iHOPFAM27L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:08 CET 2017

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