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FAM32A (family with sequence similarity 32 member A)

Identity

Alias (NCBI)OTAG-12
OTAG12
HGNC (Hugo) FAM32A
HGNC Alias symbDKFZP586O0120
OTAG-12
HGNC Previous namefamily with sequence similarity 32, member A
LocusID (NCBI) 26017
Atlas_Id 63189
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16185401 and ends at 16192046 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM32A (19p13.12) / TPM4 (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  FAM32A/TPM4 (19p13)

External links

Nomenclature
HGNC (Hugo)FAM32A   24563
Cards
Entrez_Gene (NCBI)FAM32A    family with sequence similarity 32 member A
AliasesOTAG-12; OTAG12
GeneCards (Weizmann)FAM32A
Ensembl hg19 (Hinxton)ENSG00000105058 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105058 [Gene_View]  ENSG00000105058 [Sequence]  chr19:16185401-16192046 [Contig_View]  FAM32A [Vega]
ICGC DataPortalENSG00000105058
TCGA cBioPortalFAM32A
AceView (NCBI)FAM32A
Genatlas (Paris)FAM32A
SOURCE (Princeton)FAM32A
Genetics Home Reference (NIH)FAM32A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM32A  -     chr19:16185401-16192046 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM32A  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathFAM32A - 19p13.11 [CytoView hg19]  FAM32A - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000105058
genome Data Viewer NCBIFAM32A [Mapview hg19]  
OMIM614554   
Gene and transcription
Genbank (Entrez)AF151902 AK312058 AL050157 BC000639 BC004447
RefSeq transcript (Entrez)NM_014077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM32A
Alternative Splicing GalleryENSG00000105058
Gene ExpressionFAM32A [ NCBI-GEO ]   FAM32A [ EBI - ARRAY_EXPRESS ]   FAM32A [ SEEK ]   FAM32A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM32A [ Firebrowse - Broad ]
GenevisibleExpression of FAM32A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26017
GTEX Portal (Tissue expression)FAM32A
Human Protein AtlasENSG00000105058-FAM32A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y421   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y421  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y421
Splice isoforms : SwissVarQ9Y421
PhosPhoSitePlusQ9Y421
Domains : Interpro (EBI)FAM32A   
Domain families : Pfam (Sanger)DUF1754 (PF08555)   
Domain families : Pfam (NCBI)pfam08555   
Conserved Domain (NCBI)FAM32A
Blocks (Seattle)FAM32A
PDB (RSDB)6QDV   
PDB Europe6QDV   
PDB (PDBSum)6QDV   
PDB (IMB)6QDV   
Structural Biology KnowledgeBase6QDV   
SCOP (Structural Classification of Proteins)6QDV   
CATH (Classification of proteins structures)6QDV   
SuperfamilyQ9Y421
Human Protein Atlas [tissue]ENSG00000105058-FAM32A [tissue]
Peptide AtlasQ9Y421
HPRD13305
IPIIPI00022402   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y421
IntAct (EBI)Q9Y421
BioGRIDFAM32A
STRING (EMBL)FAM32A
ZODIACFAM32A
Ontologies - Pathways
QuickGOQ9Y421
Ontology : AmiGORNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  apoptotic process  cell cycle  biological_process  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  apoptotic process  cell cycle  biological_process  
NDEx NetworkFAM32A
Atlas of Cancer Signalling NetworkFAM32A
Wikipedia pathwaysFAM32A
Orthology - Evolution
OrthoDB26017
GeneTree (enSembl)ENSG00000105058
Phylogenetic Trees/Animal Genes : TreeFamFAM32A
HOGENOMQ9Y421
Homologs : HomoloGeneFAM32A
Homology/Alignments : Family Browser (UCSC)FAM32A
Gene fusions - Rearrangements
Fusion : QuiverFAM32A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM32A [hg38]
dbVarFAM32A
ClinVarFAM32A
MonarchFAM32A
1000_GenomesFAM32A 
Exome Variant ServerFAM32A
GNOMAD BrowserENSG00000105058
Varsome BrowserFAM32A
Genomic Variants (DGV)FAM32A [DGVbeta]
DECIPHERFAM32A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM32A 
Mutations
ICGC Data PortalFAM32A 
TCGA Data PortalFAM32A 
Broad Tumor PortalFAM32A
OASIS PortalFAM32A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM32A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM32A
Mutations and Diseases : HGMDFAM32A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM32A
DgiDB (Drug Gene Interaction Database)FAM32A
DoCM (Curated mutations)FAM32A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM32A (select a term)
intoGenFAM32A
Cancer3DFAM32A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614554   
Orphanet
DisGeNETFAM32A
MedgenFAM32A
Genetic Testing Registry FAM32A
NextProtQ9Y421 [Medical]
GENETestsFAM32A
Target ValidationFAM32A
Huge Navigator FAM32A [HugePedia]
ClinGenFAM32A
Clinical trials, drugs, therapy
MyCancerGenomeFAM32A
Protein Interactions : CTD
Pharm GKB GenePA134956082
Clinical trialFAM32A
Miscellaneous
canSAR (ICR)FAM32A (select the gene name)
HarmonizomeFAM32A
DataMed IndexFAM32A
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM32A
EVEXFAM32A
GoPubMedFAM32A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:54:06 CET 2020
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