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FAM35A (family with sequence similarity 35 member A)

Identity

Alias_namesfamily with sequence similarity 35, member A
Alias_symbol (synonym)MGC5560
bA163M19.1
FAM35A1
Other alias
HGNC (Hugo) FAM35A
LocusID (NCBI) 54537
Atlas_Id 63190
Location 10q23.2  [Link to chromosome band 10q23]
Location_base_pair Starts at 87095165 and ends at 87191483 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM35A (10q23.2) / TBC1D12 (10q23.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM35A   28773
Cards
Entrez_Gene (NCBI)FAM35A  54537  family with sequence similarity 35 member A
AliasesFAM35A1; bA163M19.1
GeneCards (Weizmann)FAM35A
Ensembl hg19 (Hinxton)ENSG00000122376 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122376 [Gene_View]  chr10:87095165-87191483 [Contig_View]  FAM35A [Vega]
ICGC DataPortalENSG00000122376
TCGA cBioPortalFAM35A
AceView (NCBI)FAM35A
Genatlas (Paris)FAM35A
WikiGenes54537
SOURCE (Princeton)FAM35A
Genetics Home Reference (NIH)FAM35A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM35A  -     chr10:87095165-87191483 +  10q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM35A  -     10q23.2   [Description]    (hg19-Feb_2009)
EnsemblFAM35A - 10q23.2 [CytoView hg19]  FAM35A - 10q23.2 [CytoView hg38]
Mapping of homologs : NCBIFAM35A [Mapview hg19]  FAM35A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131775 AK022978 AK025471 AK025606 BC051863
RefSeq transcript (Entrez)NM_001330112 NM_019054
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM35A
Cluster EST : UnigeneHs.500419 [ NCBI ]
CGAP (NCI)Hs.500419
Alternative Splicing GalleryENSG00000122376
Gene ExpressionFAM35A [ NCBI-GEO ]   FAM35A [ EBI - ARRAY_EXPRESS ]   FAM35A [ SEEK ]   FAM35A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM35A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54537
GTEX Portal (Tissue expression)FAM35A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V20
Splice isoforms : SwissVarQ86V20
PhosPhoSitePlusQ86V20
Domains : Interpro (EBI)FAM35A    FAM35A_C   
Domain families : Pfam (Sanger)FAM35_C (PF15793)   
Domain families : Pfam (NCBI)pfam15793   
Conserved Domain (NCBI)FAM35A
DMDM Disease mutations54537
Blocks (Seattle)FAM35A
SuperfamilyQ86V20
Human Protein AtlasENSG00000122376
Peptide AtlasQ86V20
HPRD09944
IPIIPI00005094   IPI00655589   IPI01019000   
Protein Interaction databases
DIP (DOE-UCLA)Q86V20
IntAct (EBI)Q86V20
FunCoupENSG00000122376
BioGRIDFAM35A
STRING (EMBL)FAM35A
ZODIACFAM35A
Ontologies - Pathways
QuickGOQ86V20
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM35A
Atlas of Cancer Signalling NetworkFAM35A
Wikipedia pathwaysFAM35A
Orthology - Evolution
OrthoDB54537
GeneTree (enSembl)ENSG00000122376
Phylogenetic Trees/Animal Genes : TreeFamFAM35A
HOVERGENQ86V20
HOGENOMQ86V20
Homologs : HomoloGeneFAM35A
Homology/Alignments : Family Browser (UCSC)FAM35A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM35A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM35A
dbVarFAM35A
ClinVarFAM35A
1000_GenomesFAM35A 
Exome Variant ServerFAM35A
ExAC (Exome Aggregation Consortium)FAM35A (select the gene name)
Genetic variants : HAPMAP54537
Genomic Variants (DGV)FAM35A [DGVbeta]
DECIPHERFAM35A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM35A 
Mutations
ICGC Data PortalFAM35A 
TCGA Data PortalFAM35A 
Broad Tumor PortalFAM35A
OASIS PortalFAM35A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM35A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM35A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM35A
DgiDB (Drug Gene Interaction Database)FAM35A
DoCM (Curated mutations)FAM35A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM35A (select a term)
intoGenFAM35A
Cancer3DFAM35A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM35A
Genetic Testing Registry FAM35A
NextProtQ86V20 [Medical]
TSGene54537
GENETestsFAM35A
Target ValidationFAM35A
Huge Navigator FAM35A [HugePedia]
snp3D : Map Gene to Disease54537
BioCentury BCIQFAM35A
ClinGenFAM35A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54537
Chemical/Pharm GKB GenePA134926879
Clinical trialFAM35A
Miscellaneous
canSAR (ICR)FAM35A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM35A
EVEXFAM35A
GoPubMedFAM35A
iHOPFAM35A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:03 CEST 2017

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