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FAM3A (family with sequence similarity 3, member A)

Identity

Alias_namesfamily with sequence similarity 3, member A
Alias_symbol (synonym)DXS560S
2-19
XAP-7
Other alias2.19
DLD
HGNC (Hugo) FAM3A
LocusID (NCBI) 60343
Atlas_Id 63192
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153734490 and ends at 153744566 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AIG1 (6q24.2) / FAM3A (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM3A   13749
Cards
Entrez_Gene (NCBI)FAM3A  60343  family with sequence similarity 3, member A
Aliases2.19; DLD; DXS560S; XAP-7
GeneCards (Weizmann)FAM3A
Ensembl hg19 (Hinxton)ENSG00000071889 [Gene_View]  chrX:153734490-153744566 [Contig_View]  FAM3A [Vega]
Ensembl hg38 (Hinxton)ENSG00000071889 [Gene_View]  chrX:153734490-153744566 [Contig_View]  FAM3A [Vega]
ICGC DataPortalENSG00000071889
TCGA cBioPortalFAM3A
AceView (NCBI)FAM3A
Genatlas (Paris)FAM3A
WikiGenes60343
SOURCE (Princeton)FAM3A
Genetics Home Reference (NIH)FAM3A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM3A  -     chrX:153734490-153744566 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM3A  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblFAM3A - Xq28 [CytoView hg19]  FAM3A - Xq28 [CytoView hg38]
Mapping of homologs : NCBIFAM3A [Mapview hg19]  FAM3A [Mapview hg38]
OMIM300492   
Gene and transcription
Genbank (Entrez)AK024601 AK057945 AK124890 AK294116 AK314682
RefSeq transcript (Entrez)NM_001171132 NM_001171133 NM_001171134 NM_001282311 NM_001282312 NM_021806
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016401 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)FAM3A
Cluster EST : UnigeneHs.289108 [ NCBI ]
CGAP (NCI)Hs.289108
Alternative Splicing GalleryENSG00000071889
Gene ExpressionFAM3A [ NCBI-GEO ]   FAM3A [ EBI - ARRAY_EXPRESS ]   FAM3A [ SEEK ]   FAM3A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60343
GTEX Portal (Tissue expression)FAM3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98173   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP98173  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98173
Splice isoforms : SwissVarP98173
PhosPhoSitePlusP98173
Domains : Interpro (EBI)FAM3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM3A
DMDM Disease mutations60343
Blocks (Seattle)FAM3A
SuperfamilyP98173
Human Protein AtlasENSG00000071889
Peptide AtlasP98173
HPRD06505
IPIIPI00303894   IPI00955995   IPI00909708   IPI00642723   IPI00853519   IPI00853591   IPI00853410   IPI00179826   IPI00880088   IPI00879756   IPI00879601   IPI00879330   
Protein Interaction databases
DIP (DOE-UCLA)P98173
IntAct (EBI)P98173
FunCoupENSG00000071889
BioGRIDFAM3A
STRING (EMBL)FAM3A
ZODIACFAM3A
Ontologies - Pathways
QuickGOP98173
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  biological_process  
NDEx NetworkFAM3A
Atlas of Cancer Signalling NetworkFAM3A
Wikipedia pathwaysFAM3A
Orthology - Evolution
OrthoDB60343
GeneTree (enSembl)ENSG00000071889
Phylogenetic Trees/Animal Genes : TreeFamFAM3A
HOVERGENP98173
HOGENOMP98173
Homologs : HomoloGeneFAM3A
Homology/Alignments : Family Browser (UCSC)FAM3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM3A
dbVarFAM3A
ClinVarFAM3A
1000_GenomesFAM3A 
Exome Variant ServerFAM3A
ExAC (Exome Aggregation Consortium)FAM3A (select the gene name)
Genetic variants : HAPMAP60343
Genomic Variants (DGV)FAM3A [DGVbeta]
DECIPHER (Syndromes)X:153734490-153744566  ENSG00000071889
CONAN: Copy Number AnalysisFAM3A 
Mutations
ICGC Data PortalFAM3A 
TCGA Data PortalFAM3A 
Broad Tumor PortalFAM3A
OASIS PortalFAM3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM3A
DgiDB (Drug Gene Interaction Database)FAM3A
DoCM (Curated mutations)FAM3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM3A (select a term)
intoGenFAM3A
Cancer3DFAM3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300492   
Orphanet
MedgenFAM3A
Genetic Testing Registry FAM3A
NextProtP98173 [Medical]
TSGene60343
GENETestsFAM3A
Huge Navigator FAM3A [HugePedia]
snp3D : Map Gene to Disease60343
BioCentury BCIQFAM3A
ClinGenFAM3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60343
Chemical/Pharm GKB GenePA38366
Clinical trialFAM3A
Miscellaneous
canSAR (ICR)FAM3A (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM3A
EVEXFAM3A
GoPubMedFAM3A
iHOPFAM3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:09 CET 2017

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