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FAM3C (family with sequence similarity 3 member C)

Identity

Alias_namesfamily with sequence similarity 3
Alias_symbol (synonym)GS3876
ILEI
Other aliasGS3786
HGNC (Hugo) FAM3C
LocusID (NCBI) 10447
Atlas_Id 49752
Location 7q31.31  [Link to chromosome band 7q31]
Location_base_pair Starts at 120988905 and ends at 121036422 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM3C (7q31.31) / SERPINE2 (2q36.1)GAPDH (12p13.31) / FAM3C (7q31.31)MET (7q31.2) / FAM3C (7q31.31)
ZMIZ2 (7p13) / FAM3C (7q31.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM3C   18664
Cards
Entrez_Gene (NCBI)FAM3C  10447  family with sequence similarity 3 member C
AliasesGS3786; ILEI
GeneCards (Weizmann)FAM3C
Ensembl hg19 (Hinxton)ENSG00000196937 [Gene_View]  chr7:120988905-121036422 [Contig_View]  FAM3C [Vega]
Ensembl hg38 (Hinxton)ENSG00000196937 [Gene_View]  chr7:120988905-121036422 [Contig_View]  FAM3C [Vega]
ICGC DataPortalENSG00000196937
TCGA cBioPortalFAM3C
AceView (NCBI)FAM3C
Genatlas (Paris)FAM3C
WikiGenes10447
SOURCE (Princeton)FAM3C
Genetics Home Reference (NIH)FAM3C
Genomic and cartography
GoldenPath hg19 (UCSC)FAM3C  -     chr7:120988905-121036422 -  7q31.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM3C  -     7q31.31   [Description]    (hg38-Dec_2013)
EnsemblFAM3C - 7q31.31 [CytoView hg19]  FAM3C - 7q31.31 [CytoView hg38]
Mapping of homologs : NCBIFAM3C [Mapview hg19]  FAM3C [Mapview hg38]
OMIM608618   
Gene and transcription
Genbank (Entrez)AK290682 AK292731 BC024200 BC046932 BC068526
RefSeq transcript (Entrez)NM_001040020 NM_014888
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)FAM3C
Cluster EST : UnigeneHs.434053 [ NCBI ]
CGAP (NCI)Hs.434053
Alternative Splicing GalleryENSG00000196937
Gene ExpressionFAM3C [ NCBI-GEO ]   FAM3C [ EBI - ARRAY_EXPRESS ]   FAM3C [ SEEK ]   FAM3C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10447
GTEX Portal (Tissue expression)FAM3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92520   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92520  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92520
Splice isoforms : SwissVarQ92520
PhosPhoSitePlusQ92520
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM3C
DMDM Disease mutations10447
Blocks (Seattle)FAM3C
SuperfamilyQ92520
Human Protein AtlasENSG00000196937
Peptide AtlasQ92520
HPRD12270
IPIIPI00334282   IPI00926250   IPI00926128   IPI00925923   
Protein Interaction databases
DIP (DOE-UCLA)Q92520
IntAct (EBI)Q92520
FunCoupENSG00000196937
BioGRIDFAM3C
STRING (EMBL)FAM3C
ZODIACFAM3C
Ontologies - Pathways
QuickGOQ92520
Ontology : AmiGOplatelet degranulation  cytokine activity  protein binding  extracellular region  extracellular region  Golgi apparatus  multicellular organism development  biological_process  platelet dense granule lumen  extracellular exosome  
Ontology : EGO-EBIplatelet degranulation  cytokine activity  protein binding  extracellular region  extracellular region  Golgi apparatus  multicellular organism development  biological_process  platelet dense granule lumen  extracellular exosome  
NDEx NetworkFAM3C
Atlas of Cancer Signalling NetworkFAM3C
Wikipedia pathwaysFAM3C
Orthology - Evolution
OrthoDB10447
GeneTree (enSembl)ENSG00000196937
Phylogenetic Trees/Animal Genes : TreeFamFAM3C
HOVERGENQ92520
HOGENOMQ92520
Homologs : HomoloGeneFAM3C
Homology/Alignments : Family Browser (UCSC)FAM3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM3C
dbVarFAM3C
ClinVarFAM3C
1000_GenomesFAM3C 
Exome Variant ServerFAM3C
ExAC (Exome Aggregation Consortium)FAM3C (select the gene name)
Genetic variants : HAPMAP10447
Genomic Variants (DGV)FAM3C [DGVbeta]
DECIPHER (Syndromes)7:120988905-121036422  ENSG00000196937
CONAN: Copy Number AnalysisFAM3C 
Mutations
ICGC Data PortalFAM3C 
TCGA Data PortalFAM3C 
Broad Tumor PortalFAM3C
OASIS PortalFAM3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM3C
DgiDB (Drug Gene Interaction Database)FAM3C
DoCM (Curated mutations)FAM3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM3C (select a term)
intoGenFAM3C
Cancer3DFAM3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608618   
Orphanet
MedgenFAM3C
Genetic Testing Registry FAM3C
NextProtQ92520 [Medical]
TSGene10447
GENETestsFAM3C
Huge Navigator FAM3C [HugePedia]
snp3D : Map Gene to Disease10447
BioCentury BCIQFAM3C
ClinGenFAM3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10447
Chemical/Pharm GKB GenePA38627
Clinical trialFAM3C
Miscellaneous
canSAR (ICR)FAM3C (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM3C
EVEXFAM3C
GoPubMedFAM3C
iHOPFAM3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:45 CEST 2017

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