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FAM3D (family with sequence similarity 3 member D)

Identity

Alias_namesfamily with sequence similarity 3, member D
Alias_symbol (synonym)EF7
OIT1
Other alias
HGNC (Hugo) FAM3D
LocusID (NCBI) 131177
Atlas_Id 63193
Location 3p14.2  [Link to chromosome band 3p14]
Location_base_pair Starts at 58633943 and ends at 58666834 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIGR (1q32.1) / FAM3D (3p14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM3D   18665
Cards
Entrez_Gene (NCBI)FAM3D  131177  family with sequence similarity 3 member D
AliasesEF7; OIT1
GeneCards (Weizmann)FAM3D
Ensembl hg19 (Hinxton)ENSG00000198643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198643 [Gene_View]  chr3:58633943-58666834 [Contig_View]  FAM3D [Vega]
ICGC DataPortalENSG00000198643
TCGA cBioPortalFAM3D
AceView (NCBI)FAM3D
Genatlas (Paris)FAM3D
WikiGenes131177
SOURCE (Princeton)FAM3D
Genetics Home Reference (NIH)FAM3D
Genomic and cartography
GoldenPath hg38 (UCSC)FAM3D  -     chr3:58633943-58666834 -  3p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM3D  -     3p14.2   [Description]    (hg19-Feb_2009)
EnsemblFAM3D - 3p14.2 [CytoView hg19]  FAM3D - 3p14.2 [CytoView hg38]
Mapping of homologs : NCBIFAM3D [Mapview hg19]  FAM3D [Mapview hg38]
OMIM608619   
Gene and transcription
Genbank (Entrez)AB105189 AF494381 AK127546 AW662283 AY358677
RefSeq transcript (Entrez)NM_138805
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM3D
Cluster EST : UnigeneHs.61265 [ NCBI ]
CGAP (NCI)Hs.61265
Alternative Splicing GalleryENSG00000198643
Gene ExpressionFAM3D [ NCBI-GEO ]   FAM3D [ EBI - ARRAY_EXPRESS ]   FAM3D [ SEEK ]   FAM3D [ MEM ]
Gene Expression Viewer (FireBrowse)FAM3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131177
GTEX Portal (Tissue expression)FAM3D
Human Protein AtlasENSG00000198643-FAM3D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BQ1
Splice isoforms : SwissVarQ96BQ1
PhosPhoSitePlusQ96BQ1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM3D
DMDM Disease mutations131177
Blocks (Seattle)FAM3D
SuperfamilyQ96BQ1
Human Protein Atlas [tissue]ENSG00000198643-FAM3D [tissue]
Peptide AtlasQ96BQ1
HPRD12271
IPIIPI00060143   IPI00945482   IPI00792657   IPI00946390   IPI00791160   
Protein Interaction databases
DIP (DOE-UCLA)Q96BQ1
IntAct (EBI)Q96BQ1
FunCoupENSG00000198643
BioGRIDFAM3D
STRING (EMBL)FAM3D
ZODIACFAM3D
Ontologies - Pathways
QuickGOQ96BQ1
Ontology : AmiGOcytokine activity  extracellular region  negative regulation of insulin secretion  
Ontology : EGO-EBIcytokine activity  extracellular region  negative regulation of insulin secretion  
NDEx NetworkFAM3D
Atlas of Cancer Signalling NetworkFAM3D
Wikipedia pathwaysFAM3D
Orthology - Evolution
OrthoDB131177
GeneTree (enSembl)ENSG00000198643
Phylogenetic Trees/Animal Genes : TreeFamFAM3D
HOVERGENQ96BQ1
HOGENOMQ96BQ1
Homologs : HomoloGeneFAM3D
Homology/Alignments : Family Browser (UCSC)FAM3D
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM3D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM3D
dbVarFAM3D
ClinVarFAM3D
1000_GenomesFAM3D 
Exome Variant ServerFAM3D
ExAC (Exome Aggregation Consortium)ENSG00000198643
GNOMAD BrowserENSG00000198643
Genetic variants : HAPMAP131177
Genomic Variants (DGV)FAM3D [DGVbeta]
DECIPHERFAM3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM3D 
Mutations
ICGC Data PortalFAM3D 
TCGA Data PortalFAM3D 
Broad Tumor PortalFAM3D
OASIS PortalFAM3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM3D
DgiDB (Drug Gene Interaction Database)FAM3D
DoCM (Curated mutations)FAM3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM3D (select a term)
intoGenFAM3D
Cancer3DFAM3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608619   
Orphanet
MedgenFAM3D
Genetic Testing Registry FAM3D
NextProtQ96BQ1 [Medical]
TSGene131177
GENETestsFAM3D
Target ValidationFAM3D
Huge Navigator FAM3D [HugePedia]
snp3D : Map Gene to Disease131177
BioCentury BCIQFAM3D
ClinGenFAM3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131177
Chemical/Pharm GKB GenePA38628
Clinical trialFAM3D
Miscellaneous
canSAR (ICR)FAM3D (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM3D
EVEXFAM3D
GoPubMedFAM3D
iHOPFAM3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 11:47:09 CET 2017

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