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FAM43A (family with sequence similarity 43 member A)

Identity

Alias_namesfamily with sequence similarity 43, member A
Alias_symbol (synonym)FLJ90022
Other alias-
HGNC (Hugo) FAM43A
LocusID (NCBI) 131583
Atlas_Id 63197
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 194685893 and ends at 194689037 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM43A   26888
Cards
Entrez_Gene (NCBI)FAM43A  131583  family with sequence similarity 43 member A
Aliases
GeneCards (Weizmann)FAM43A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:194685893-194689037 [Contig_View]  FAM43A [Vega]
TCGA cBioPortalFAM43A
AceView (NCBI)FAM43A
Genatlas (Paris)FAM43A
WikiGenes131583
SOURCE (Princeton)FAM43A
Genetics Home Reference (NIH)FAM43A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM43A  -     chr3:194685893-194689037 +  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM43A  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblFAM43A - 3q29 [CytoView hg19]  FAM43A - 3q29 [CytoView hg38]
Mapping of homologs : NCBIFAM43A [Mapview hg19]  FAM43A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF147314 AF289585 AK074503 BC039689 BC064989
RefSeq transcript (Entrez)NM_153690
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM43A
Cluster EST : UnigeneHs.435080 [ NCBI ]
CGAP (NCI)Hs.435080
Gene ExpressionFAM43A [ NCBI-GEO ]   FAM43A [ EBI - ARRAY_EXPRESS ]   FAM43A [ SEEK ]   FAM43A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM43A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131583
GTEX Portal (Tissue expression)FAM43A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2R8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2R8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2R8
Splice isoforms : SwissVarQ8N2R8
PhosPhoSitePlusQ8N2R8
Domains : Interpro (EBI)FAM43A/B_PTB    PH_dom-like    PTB/PI_dom   
Domain families : Pfam (Sanger)PID_2 (PF14719)   
Domain families : Pfam (NCBI)pfam14719   
Domain families : Smart (EMBL)PTB (SM00462)  
Conserved Domain (NCBI)FAM43A
DMDM Disease mutations131583
Blocks (Seattle)FAM43A
SuperfamilyQ8N2R8
Peptide AtlasQ8N2R8
HPRD13308
IPIIPI00293320   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2R8
IntAct (EBI)Q8N2R8
BioGRIDFAM43A
STRING (EMBL)FAM43A
ZODIACFAM43A
Ontologies - Pathways
QuickGOQ8N2R8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM43A
Atlas of Cancer Signalling NetworkFAM43A
Wikipedia pathwaysFAM43A
Orthology - Evolution
OrthoDB131583
Phylogenetic Trees/Animal Genes : TreeFamFAM43A
HOVERGENQ8N2R8
HOGENOMQ8N2R8
Homologs : HomoloGeneFAM43A
Homology/Alignments : Family Browser (UCSC)FAM43A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM43A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM43A
dbVarFAM43A
ClinVarFAM43A
1000_GenomesFAM43A 
Exome Variant ServerFAM43A
ExAC (Exome Aggregation Consortium)FAM43A (select the gene name)
Genetic variants : HAPMAP131583
Genomic Variants (DGV)FAM43A [DGVbeta]
DECIPHERFAM43A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM43A 
Mutations
ICGC Data PortalFAM43A 
TCGA Data PortalFAM43A 
Broad Tumor PortalFAM43A
OASIS PortalFAM43A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM43A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM43A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM43A
DgiDB (Drug Gene Interaction Database)FAM43A
DoCM (Curated mutations)FAM43A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM43A (select a term)
intoGenFAM43A
Cancer3DFAM43A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM43A
Genetic Testing Registry FAM43A
NextProtQ8N2R8 [Medical]
TSGene131583
GENETestsFAM43A
Target ValidationFAM43A
Huge Navigator FAM43A [HugePedia]
snp3D : Map Gene to Disease131583
BioCentury BCIQFAM43A
ClinGenFAM43A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131583
Chemical/Pharm GKB GenePA134950686
Clinical trialFAM43A
Miscellaneous
canSAR (ICR)FAM43A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM43A
EVEXFAM43A
GoPubMedFAM43A
iHOPFAM43A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:05 CEST 2017

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