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FAM43B (family with sequence similarity 43 member B)

Identity

Alias_namesfamily with sequence similarity 43
Alias_symbol (synonym)FLJ44952
Other alias-
HGNC (Hugo) FAM43B
LocusID (NCBI) 163933
Atlas_Id 52462
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 20552439 and ends at 20555020 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM43B   31791
Cards
Entrez_Gene (NCBI)FAM43B  163933  family with sequence similarity 43 member B
Aliases
GeneCards (Weizmann)FAM43B
Ensembl hg19 (Hinxton)ENSG00000183114 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183114 [Gene_View]  chr1:20552439-20555020 [Contig_View]  FAM43B [Vega]
ICGC DataPortalENSG00000183114
TCGA cBioPortalFAM43B
AceView (NCBI)FAM43B
Genatlas (Paris)FAM43B
WikiGenes163933
SOURCE (Princeton)FAM43B
Genetics Home Reference (NIH)FAM43B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM43B  -     chr1:20552439-20555020 +  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM43B  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblFAM43B - 1p36.12 [CytoView hg19]  FAM43B - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIFAM43B [Mapview hg19]  FAM43B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126900 BC015675 BC142610 BC142686
RefSeq transcript (Entrez)NM_207334
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM43B
Cluster EST : UnigeneHs.429179 [ NCBI ]
CGAP (NCI)Hs.429179
Alternative Splicing GalleryENSG00000183114
Gene ExpressionFAM43B [ NCBI-GEO ]   FAM43B [ EBI - ARRAY_EXPRESS ]   FAM43B [ SEEK ]   FAM43B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM43B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163933
GTEX Portal (Tissue expression)FAM43B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZT52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZT52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZT52
Splice isoforms : SwissVarQ6ZT52
PhosPhoSitePlusQ6ZT52
Domains : Interpro (EBI)FAM43A/B_PTB    PH_dom-like    PTB/PI_dom   
Domain families : Pfam (Sanger)PID_2 (PF14719)   
Domain families : Pfam (NCBI)pfam14719   
Domain families : Smart (EMBL)PTB (SM00462)  
Conserved Domain (NCBI)FAM43B
DMDM Disease mutations163933
Blocks (Seattle)FAM43B
SuperfamilyQ6ZT52
Human Protein AtlasENSG00000183114
Peptide AtlasQ6ZT52
HPRD16881
IPIIPI00077711   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZT52
IntAct (EBI)Q6ZT52
FunCoupENSG00000183114
BioGRIDFAM43B
STRING (EMBL)FAM43B
ZODIACFAM43B
Ontologies - Pathways
QuickGOQ6ZT52
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM43B
Atlas of Cancer Signalling NetworkFAM43B
Wikipedia pathwaysFAM43B
Orthology - Evolution
OrthoDB163933
GeneTree (enSembl)ENSG00000183114
Phylogenetic Trees/Animal Genes : TreeFamFAM43B
HOVERGENQ6ZT52
HOGENOMQ6ZT52
Homologs : HomoloGeneFAM43B
Homology/Alignments : Family Browser (UCSC)FAM43B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM43B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM43B
dbVarFAM43B
ClinVarFAM43B
1000_GenomesFAM43B 
Exome Variant ServerFAM43B
ExAC (Exome Aggregation Consortium)FAM43B (select the gene name)
Genetic variants : HAPMAP163933
Genomic Variants (DGV)FAM43B [DGVbeta]
DECIPHERFAM43B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM43B 
Mutations
ICGC Data PortalFAM43B 
TCGA Data PortalFAM43B 
Broad Tumor PortalFAM43B
OASIS PortalFAM43B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM43B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM43B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM43B
DgiDB (Drug Gene Interaction Database)FAM43B
DoCM (Curated mutations)FAM43B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM43B (select a term)
intoGenFAM43B
Cancer3DFAM43B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM43B
Genetic Testing Registry FAM43B
NextProtQ6ZT52 [Medical]
TSGene163933
GENETestsFAM43B
Target ValidationFAM43B
Huge Navigator FAM43B [HugePedia]
snp3D : Map Gene to Disease163933
BioCentury BCIQFAM43B
ClinGenFAM43B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163933
Chemical/Pharm GKB GenePA134976508
Clinical trialFAM43B
Miscellaneous
canSAR (ICR)FAM43B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM43B
EVEXFAM43B
GoPubMedFAM43B
iHOPFAM43B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:53:04 CEST 2017

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