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FAM45A (family with sequence similarity 45, member A)

Identity

Alias_namesfamily with sequence similarity 45, member A
Other alias-
HGNC (Hugo) FAM45A
LocusID (NCBI) 404636
Atlas_Id 63198
Location 10q26.11  [Link to chromosome band 10q26]
Location_base_pair Starts at 120863577 and ends at 120897496 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DCUN1D2 (13q34) / FAM45A (10q26.11)FAM45A (10q26.11) / GRK5 (10q26.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM45A   31793
Cards
Entrez_Gene (NCBI)FAM45A  404636  family with sequence similarity 45, member A
Aliases
GeneCards (Weizmann)FAM45A
Ensembl hg19 (Hinxton) [Gene_View]  chr10:120863577-120897496 [Contig_View]  FAM45A [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:120863577-120897496 [Contig_View]  FAM45A [Vega]
TCGA cBioPortalFAM45A
AceView (NCBI)FAM45A
Genatlas (Paris)FAM45A
WikiGenes404636
SOURCE (Princeton)FAM45A
Genetics Home Reference (NIH)FAM45A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM45A  -     chr10:120863577-120897496 +  10q26.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM45A  -     10q26.11   [Description]    (hg38-Dec_2013)
EnsemblFAM45A - 10q26.11 [CytoView hg19]  FAM45A - 10q26.11 [CytoView hg38]
Mapping of homologs : NCBIFAM45A [Mapview hg19]  FAM45A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF168713 AK000031 AK025354 AK027029 AK293136
RefSeq transcript (Entrez)NM_001303111 NM_001303112 NM_001303113 NM_207009
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)FAM45A
Cluster EST : UnigeneHs.567120 [ NCBI ]
CGAP (NCI)Hs.567120
Gene ExpressionFAM45A [ NCBI-GEO ]   FAM45A [ EBI - ARRAY_EXPRESS ]   FAM45A [ SEEK ]   FAM45A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM45A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404636
GTEX Portal (Tissue expression)FAM45A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCE6
Splice isoforms : SwissVarQ8TCE6
PhosPhoSitePlusQ8TCE6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM45A
DMDM Disease mutations404636
Blocks (Seattle)FAM45A
SuperfamilyQ8TCE6
Peptide AtlasQ8TCE6
HPRD13310
IPIIPI00410631   IPI00953673   IPI00909128   IPI01009554   IPI00385583   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCE6
IntAct (EBI)Q8TCE6
BioGRIDFAM45A
STRING (EMBL)FAM45A
ZODIACFAM45A
Ontologies - Pathways
QuickGOQ8TCE6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM45A
Atlas of Cancer Signalling NetworkFAM45A
Wikipedia pathwaysFAM45A
Orthology - Evolution
OrthoDB404636
Phylogenetic Trees/Animal Genes : TreeFamFAM45A
HOVERGENQ8TCE6
HOGENOMQ8TCE6
Homologs : HomoloGeneFAM45A
Homology/Alignments : Family Browser (UCSC)FAM45A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM45A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM45A
dbVarFAM45A
ClinVarFAM45A
1000_GenomesFAM45A 
Exome Variant ServerFAM45A
ExAC (Exome Aggregation Consortium)FAM45A (select the gene name)
Genetic variants : HAPMAP404636
Genomic Variants (DGV)FAM45A [DGVbeta]
DECIPHER (Syndromes)10:120863577-120897496  
CONAN: Copy Number AnalysisFAM45A 
Mutations
ICGC Data PortalFAM45A 
TCGA Data PortalFAM45A 
Broad Tumor PortalFAM45A
OASIS PortalFAM45A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM45A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM45A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM45A
DgiDB (Drug Gene Interaction Database)FAM45A
DoCM (Curated mutations)FAM45A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM45A (select a term)
intoGenFAM45A
Cancer3DFAM45A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM45A
Genetic Testing Registry FAM45A
NextProtQ8TCE6 [Medical]
TSGene404636
GENETestsFAM45A
Huge Navigator FAM45A [HugePedia]
snp3D : Map Gene to Disease404636
BioCentury BCIQFAM45A
ClinGenFAM45A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404636
Chemical/Pharm GKB GenePA134935316
Clinical trialFAM45A
Miscellaneous
canSAR (ICR)FAM45A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM45A
EVEXFAM45A
GoPubMedFAM45A
iHOPFAM45A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:10 CET 2017

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