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FAM45B (family with sequence similarity 45, member A pseudogene)

Identity

Other aliasHT011
HGNC (Hugo) FAM45B
LocusID (NCBI) 55855
Atlas_Id 63199
Location 10q26.11  [Link to chromosome band 10q26]
Location_base_pair Starts at 120863629 and ends at 120896685 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM45B   30886
Cards
Entrez_Gene (NCBI)FAM45B  55855  family with sequence similarity 45, member A pseudogene
AliasesHT011
GeneCards (Weizmann)FAM45B
Ensembl hg19 (Hinxton) [Gene_View]  chr10:120863629-120896685 [Contig_View]  FAM45B [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:120863629-120896685 [Contig_View]  FAM45B [Vega]
TCGA cBioPortalFAM45B
AceView (NCBI)FAM45B
Genatlas (Paris)FAM45B
WikiGenes55855
SOURCE (Princeton)FAM45B
Genetics Home Reference (NIH)FAM45B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM45B  -     chr10:120863629-120896685 +  10q26.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM45B  -     10q26.11   [Description]    (hg38-Dec_2013)
EnsemblFAM45B - 10q26.11 [CytoView hg19]  FAM45B - 10q26.11 [CytoView hg38]
Mapping of homologs : NCBIFAM45B [Mapview hg19]  FAM45B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF220185 BC069821 HQ447460
RefSeq transcript (Entrez)NM_018472
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021369 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)FAM45B
Cluster EST : UnigeneHs.567120 [ NCBI ]
CGAP (NCI)Hs.567120
Gene ExpressionFAM45B [ NCBI-GEO ]   FAM45B [ EBI - ARRAY_EXPRESS ]   FAM45B [ SEEK ]   FAM45B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM45B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55855
GTEX Portal (Tissue expression)FAM45B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NSW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NSW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NSW5
Splice isoforms : SwissVarQ6NSW5
PhosPhoSitePlusQ6NSW5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM45B
DMDM Disease mutations55855
Blocks (Seattle)FAM45B
SuperfamilyQ6NSW5
Peptide AtlasQ6NSW5
HPRD06592
IPIIPI00020529   
Protein Interaction databases
DIP (DOE-UCLA)Q6NSW5
IntAct (EBI)Q6NSW5
BioGRIDFAM45B
STRING (EMBL)FAM45B
ZODIACFAM45B
Ontologies - Pathways
QuickGOQ6NSW5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM45B
Atlas of Cancer Signalling NetworkFAM45B
Wikipedia pathwaysFAM45B
Orthology - Evolution
OrthoDB55855
Phylogenetic Trees/Animal Genes : TreeFamFAM45B
HOVERGENQ6NSW5
HOGENOMQ6NSW5
Homologs : HomoloGeneFAM45B
Homology/Alignments : Family Browser (UCSC)FAM45B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM45B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM45B
dbVarFAM45B
ClinVarFAM45B
1000_GenomesFAM45B 
Exome Variant ServerFAM45B
ExAC (Exome Aggregation Consortium)FAM45B (select the gene name)
Genetic variants : HAPMAP55855
Genomic Variants (DGV)FAM45B [DGVbeta]
DECIPHER (Syndromes)10:120863629-120896685  
CONAN: Copy Number AnalysisFAM45B 
Mutations
ICGC Data PortalFAM45B 
TCGA Data PortalFAM45B 
Broad Tumor PortalFAM45B
OASIS PortalFAM45B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM45B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM45B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM45B
DgiDB (Drug Gene Interaction Database)FAM45B
DoCM (Curated mutations)FAM45B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM45B (select a term)
intoGenFAM45B
Cancer3DFAM45B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM45B
Genetic Testing Registry FAM45B
NextProtQ6NSW5 [Medical]
TSGene55855
GENETestsFAM45B
Huge Navigator FAM45B [HugePedia]
snp3D : Map Gene to Disease55855
BioCentury BCIQFAM45B
ClinGenFAM45B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55855
Chemical/Pharm GKB GenePA134868512
Clinical trialFAM45B
Miscellaneous
canSAR (ICR)FAM45B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM45B
EVEXFAM45B
GoPubMedFAM45B
iHOPFAM45B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:10 CET 2017

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