Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM45BP (family with sequence similarity 45, member A pseudogene)

Identity

Alias_namesFAM45B
family with sequence similarity 45, member B
family with sequence similarity 45, member B (pseudogene)
Alias_symbol (synonym)HT011
Other alias
HGNC (Hugo) FAM45BP
LocusID (NCBI) 55855
Atlas_Id 78126
Location Xq26.1  [Link to chromosome band Xq26]
Location_base_pair Starts at 130494941 and ends at 130496758 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM45BP   30886
Cards
Entrez_Gene (NCBI)FAM45BP  55855  family with sequence similarity 45, member A pseudogene
AliasesFAM45B; HT011
GeneCards (Weizmann)FAM45BP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:130494941-130496758 [Contig_View]  FAM45BP [Vega]
TCGA cBioPortalFAM45BP
AceView (NCBI)FAM45BP
Genatlas (Paris)FAM45BP
WikiGenes55855
SOURCE (Princeton)FAM45BP
Genetics Home Reference (NIH)FAM45BP
Genomic and cartography
GoldenPath hg38 (UCSC)FAM45BP  -     chrX:130494941-130496758 +  Xq26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM45BP  -     Xq26.1   [Description]    (hg19-Feb_2009)
EnsemblFAM45BP - Xq26.1 [CytoView hg19]  FAM45BP - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIFAM45BP [Mapview hg19]  FAM45BP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF220185 BC069821 HQ447460
RefSeq transcript (Entrez)NM_018472
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM45BP
Cluster EST : UnigeneHs.567120 [ NCBI ]
CGAP (NCI)Hs.567120
Gene ExpressionFAM45BP [ NCBI-GEO ]   FAM45BP [ EBI - ARRAY_EXPRESS ]   FAM45BP [ SEEK ]   FAM45BP [ MEM ]
Gene Expression Viewer (FireBrowse)FAM45BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55855
GTEX Portal (Tissue expression)FAM45BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NSW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NSW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NSW5
Splice isoforms : SwissVarQ6NSW5
PhosPhoSitePlusQ6NSW5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM45BP
DMDM Disease mutations55855
Blocks (Seattle)FAM45BP
SuperfamilyQ6NSW5
Peptide AtlasQ6NSW5
HPRD06592
IPIIPI00020529   
Protein Interaction databases
DIP (DOE-UCLA)Q6NSW5
IntAct (EBI)Q6NSW5
BioGRIDFAM45BP
STRING (EMBL)FAM45BP
ZODIACFAM45BP
Ontologies - Pathways
QuickGOQ6NSW5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM45BP
Atlas of Cancer Signalling NetworkFAM45BP
Wikipedia pathwaysFAM45BP
Orthology - Evolution
OrthoDB55855
Phylogenetic Trees/Animal Genes : TreeFamFAM45BP
HOVERGENQ6NSW5
HOGENOMQ6NSW5
Homologs : HomoloGeneFAM45BP
Homology/Alignments : Family Browser (UCSC)FAM45BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM45BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM45BP
dbVarFAM45BP
ClinVarFAM45BP
1000_GenomesFAM45BP 
Exome Variant ServerFAM45BP
ExAC (Exome Aggregation Consortium)FAM45BP (select the gene name)
Genetic variants : HAPMAP55855
Genomic Variants (DGV)FAM45BP [DGVbeta]
DECIPHERFAM45BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM45BP 
Mutations
ICGC Data PortalFAM45BP 
TCGA Data PortalFAM45BP 
Broad Tumor PortalFAM45BP
OASIS PortalFAM45BP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM45BP
BioMutasearch FAM45BP
DgiDB (Drug Gene Interaction Database)FAM45BP
DoCM (Curated mutations)FAM45BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM45BP (select a term)
intoGenFAM45BP
Cancer3DFAM45BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM45BP
Genetic Testing Registry FAM45BP
NextProtQ6NSW5 [Medical]
TSGene55855
GENETestsFAM45BP
Huge Navigator FAM45BP [HugePedia]
snp3D : Map Gene to Disease55855
BioCentury BCIQFAM45BP
ClinGenFAM45BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55855
Chemical/Pharm GKB GenePA134868512
Clinical trialFAM45BP
Miscellaneous
canSAR (ICR)FAM45BP (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM45BP
EVEXFAM45BP
GoPubMedFAM45BP
iHOPFAM45BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:11:24 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.