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FAM46B (family with sequence similarity 46 member B)

Identity

Alias_namesfamily with sequence similarity 46, member B
Alias_symbol (synonym)MGC16491
Other alias-
HGNC (Hugo) FAM46B
LocusID (NCBI) 115572
Atlas_Id 63200
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 27005020 and ends at 27012842 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM46B   28273
Cards
Entrez_Gene (NCBI)FAM46B  115572  family with sequence similarity 46 member B
Aliases
GeneCards (Weizmann)FAM46B
Ensembl hg19 (Hinxton)ENSG00000158246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158246 [Gene_View]  chr1:27005020-27012842 [Contig_View]  FAM46B [Vega]
ICGC DataPortalENSG00000158246
TCGA cBioPortalFAM46B
AceView (NCBI)FAM46B
Genatlas (Paris)FAM46B
WikiGenes115572
SOURCE (Princeton)FAM46B
Genetics Home Reference (NIH)FAM46B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM46B  -     chr1:27005020-27012842 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM46B  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblFAM46B - 1p36.11 [CytoView hg19]  FAM46B - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIFAM46B [Mapview hg19]  FAM46B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122816 BC012790 BC014160 BC036320 CN311438
RefSeq transcript (Entrez)NM_052943
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM46B
Cluster EST : UnigeneHs.632378 [ NCBI ]
CGAP (NCI)Hs.632378
Alternative Splicing GalleryENSG00000158246
Gene ExpressionFAM46B [ NCBI-GEO ]   FAM46B [ EBI - ARRAY_EXPRESS ]   FAM46B [ SEEK ]   FAM46B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM46B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115572
GTEX Portal (Tissue expression)FAM46B
Human Protein AtlasENSG00000158246-FAM46B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A09
Splice isoforms : SwissVarQ96A09
PhosPhoSitePlusQ96A09
Domains : Interpro (EBI)DUF1693   
Domain families : Pfam (Sanger)NTP_transf_7 (PF07984)   
Domain families : Pfam (NCBI)pfam07984   
Domain families : Smart (EMBL)DUF1693 (SM01153)  
Conserved Domain (NCBI)FAM46B
DMDM Disease mutations115572
Blocks (Seattle)FAM46B
SuperfamilyQ96A09
Human Protein Atlas [tissue]ENSG00000158246-FAM46B [tissue]
Peptide AtlasQ96A09
HPRD16882
IPIIPI00939759   
Protein Interaction databases
DIP (DOE-UCLA)Q96A09
IntAct (EBI)Q96A09
FunCoupENSG00000158246
BioGRIDFAM46B
STRING (EMBL)FAM46B
ZODIACFAM46B
Ontologies - Pathways
QuickGOQ96A09
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM46B
Atlas of Cancer Signalling NetworkFAM46B
Wikipedia pathwaysFAM46B
Orthology - Evolution
OrthoDB115572
GeneTree (enSembl)ENSG00000158246
Phylogenetic Trees/Animal Genes : TreeFamFAM46B
HOVERGENQ96A09
HOGENOMQ96A09
Homologs : HomoloGeneFAM46B
Homology/Alignments : Family Browser (UCSC)FAM46B
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM46B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM46B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM46B
dbVarFAM46B
ClinVarFAM46B
1000_GenomesFAM46B 
Exome Variant ServerFAM46B
ExAC (Exome Aggregation Consortium)ENSG00000158246
GNOMAD BrowserENSG00000158246
Genetic variants : HAPMAP115572
Genomic Variants (DGV)FAM46B [DGVbeta]
DECIPHERFAM46B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM46B 
Mutations
ICGC Data PortalFAM46B 
TCGA Data PortalFAM46B 
Broad Tumor PortalFAM46B
OASIS PortalFAM46B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM46B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM46B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM46B
DgiDB (Drug Gene Interaction Database)FAM46B
DoCM (Curated mutations)FAM46B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM46B (select a term)
intoGenFAM46B
Cancer3DFAM46B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM46B
Genetic Testing Registry FAM46B
NextProtQ96A09 [Medical]
TSGene115572
GENETestsFAM46B
Target ValidationFAM46B
Huge Navigator FAM46B [HugePedia]
snp3D : Map Gene to Disease115572
BioCentury BCIQFAM46B
ClinGenFAM46B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115572
Chemical/Pharm GKB GenePA134962922
Clinical trialFAM46B
Miscellaneous
canSAR (ICR)FAM46B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM46B
EVEXFAM46B
GoPubMedFAM46B
iHOPFAM46B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:47:11 CET 2017

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