Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM46C (family with sequence similarity 46 member C)

Identity

Alias_namesfamily with sequence similarity 46
Alias_symbol (synonym)FLJ20202
Other alias-
HGNC (Hugo) FAM46C
LocusID (NCBI) 54855
Atlas_Id 53755
Location 1p12  [Link to chromosome band 1p12]
Location_base_pair Starts at 117605982 and ends at 117628389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DAB1 (1p32.2) / FAM46C (1p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM46C   24712
Cards
Entrez_Gene (NCBI)FAM46C  54855  family with sequence similarity 46 member C
Aliases
GeneCards (Weizmann)FAM46C
Ensembl hg19 (Hinxton)ENSG00000183508 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183508 [Gene_View]  chr1:117605982-117628389 [Contig_View]  FAM46C [Vega]
ICGC DataPortalENSG00000183508
TCGA cBioPortalFAM46C
AceView (NCBI)FAM46C
Genatlas (Paris)FAM46C
WikiGenes54855
SOURCE (Princeton)FAM46C
Genetics Home Reference (NIH)FAM46C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM46C  -     chr1:117605982-117628389 +  1p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM46C  -     1p12   [Description]    (hg19-Feb_2009)
EnsemblFAM46C - 1p12 [CytoView hg19]  FAM46C - 1p12 [CytoView hg38]
Mapping of homologs : NCBIFAM46C [Mapview hg19]  FAM46C [Mapview hg38]
OMIM613952   
Gene and transcription
Genbank (Entrez)AK000209 AK091327 AL046016 BC036516 BC131726
RefSeq transcript (Entrez)NM_017709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM46C
Cluster EST : UnigeneHs.356216 [ NCBI ]
CGAP (NCI)Hs.356216
Alternative Splicing GalleryENSG00000183508
Gene ExpressionFAM46C [ NCBI-GEO ]   FAM46C [ EBI - ARRAY_EXPRESS ]   FAM46C [ SEEK ]   FAM46C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM46C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54855
GTEX Portal (Tissue expression)FAM46C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWP2
Splice isoforms : SwissVarQ5VWP2
PhosPhoSitePlusQ5VWP2
Domains : Interpro (EBI)DUF1693   
Domain families : Pfam (Sanger)NTP_transf_7 (PF07984)   
Domain families : Pfam (NCBI)pfam07984   
Domain families : Smart (EMBL)DUF1693 (SM01153)  
Conserved Domain (NCBI)FAM46C
DMDM Disease mutations54855
Blocks (Seattle)FAM46C
SuperfamilyQ5VWP2
Human Protein AtlasENSG00000183508
Peptide AtlasQ5VWP2
HPRD13312
IPIIPI00646224   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWP2
IntAct (EBI)Q5VWP2
FunCoupENSG00000183508
BioGRIDFAM46C
STRING (EMBL)FAM46C
ZODIACFAM46C
Ontologies - Pathways
QuickGOQ5VWP2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM46C
Atlas of Cancer Signalling NetworkFAM46C
Wikipedia pathwaysFAM46C
Orthology - Evolution
OrthoDB54855
GeneTree (enSembl)ENSG00000183508
Phylogenetic Trees/Animal Genes : TreeFamFAM46C
HOVERGENQ5VWP2
HOGENOMQ5VWP2
Homologs : HomoloGeneFAM46C
Homology/Alignments : Family Browser (UCSC)FAM46C
Gene fusions - Rearrangements
Fusion : MitelmanDAB1/FAM46C [1p32.2/1p12]  [t(1;1)(p12;p32)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM46C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM46C
dbVarFAM46C
ClinVarFAM46C
1000_GenomesFAM46C 
Exome Variant ServerFAM46C
ExAC (Exome Aggregation Consortium)FAM46C (select the gene name)
Genetic variants : HAPMAP54855
Genomic Variants (DGV)FAM46C [DGVbeta]
DECIPHERFAM46C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM46C 
Mutations
ICGC Data PortalFAM46C 
TCGA Data PortalFAM46C 
Broad Tumor PortalFAM46C
OASIS PortalFAM46C [ Somatic mutations - Copy number]
Cancer Gene: CensusFAM46C 
Somatic Mutations in Cancer : COSMICFAM46C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM46C
intOGen PortalFAM46C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM46C
DgiDB (Drug Gene Interaction Database)FAM46C
DoCM (Curated mutations)FAM46C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM46C (select a term)
intoGenFAM46C
Cancer3DFAM46C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613952   
Orphanet
MedgenFAM46C
Genetic Testing Registry FAM46C
NextProtQ5VWP2 [Medical]
TSGene54855
GENETestsFAM46C
Target ValidationFAM46C
Huge Navigator FAM46C [HugePedia]
snp3D : Map Gene to Disease54855
BioCentury BCIQFAM46C
ClinGenFAM46C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54855
Chemical/Pharm GKB GenePA134955264
Clinical trialFAM46C
Miscellaneous
canSAR (ICR)FAM46C (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM46C
EVEXFAM46C
GoPubMedFAM46C
iHOPFAM46C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:07:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.