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FAM46D (family with sequence similarity 46 member D)

Identity

Alias_namesfamily with sequence similarity 46
Alias_symbol (synonym)MGC26999
CT1.26
CT112
Other alias
HGNC (Hugo) FAM46D
LocusID (NCBI) 169966
Atlas_Id 51247
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 80335504 and ends at 80445311 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM46D   28399
Cards
Entrez_Gene (NCBI)FAM46D  169966  family with sequence similarity 46 member D
AliasesCT1.26; CT112
GeneCards (Weizmann)FAM46D
Ensembl hg19 (Hinxton)ENSG00000174016 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174016 [Gene_View]  chrX:80335504-80445311 [Contig_View]  FAM46D [Vega]
ICGC DataPortalENSG00000174016
TCGA cBioPortalFAM46D
AceView (NCBI)FAM46D
Genatlas (Paris)FAM46D
WikiGenes169966
SOURCE (Princeton)FAM46D
Genetics Home Reference (NIH)FAM46D
Genomic and cartography
GoldenPath hg38 (UCSC)FAM46D  -     chrX:80335504-80445311 +  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM46D  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblFAM46D - Xq21.1 [CytoView hg19]  FAM46D - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIFAM46D [Mapview hg19]  FAM46D [Mapview hg38]
OMIM300976   
Gene and transcription
Genbank (Entrez)AK128147 AK313875 BC028710 BC030784 BC034979
RefSeq transcript (Entrez)NM_001170574 NM_152630
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM46D
Cluster EST : UnigeneHs.367959 [ NCBI ]
CGAP (NCI)Hs.367959
Alternative Splicing GalleryENSG00000174016
Gene ExpressionFAM46D [ NCBI-GEO ]   FAM46D [ EBI - ARRAY_EXPRESS ]   FAM46D [ SEEK ]   FAM46D [ MEM ]
Gene Expression Viewer (FireBrowse)FAM46D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169966
GTEX Portal (Tissue expression)FAM46D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEK8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEK8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEK8
Splice isoforms : SwissVarQ8NEK8
PhosPhoSitePlusQ8NEK8
Domains : Interpro (EBI)DUF1693   
Domain families : Pfam (Sanger)NTP_transf_7 (PF07984)   
Domain families : Pfam (NCBI)pfam07984   
Domain families : Smart (EMBL)DUF1693 (SM01153)  
Conserved Domain (NCBI)FAM46D
DMDM Disease mutations169966
Blocks (Seattle)FAM46D
SuperfamilyQ8NEK8
Human Protein AtlasENSG00000174016
Peptide AtlasQ8NEK8
HPRD06643
IPIIPI00646988   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEK8
IntAct (EBI)Q8NEK8
FunCoupENSG00000174016
BioGRIDFAM46D
STRING (EMBL)FAM46D
ZODIACFAM46D
Ontologies - Pathways
QuickGOQ8NEK8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM46D
Atlas of Cancer Signalling NetworkFAM46D
Wikipedia pathwaysFAM46D
Orthology - Evolution
OrthoDB169966
GeneTree (enSembl)ENSG00000174016
Phylogenetic Trees/Animal Genes : TreeFamFAM46D
HOVERGENQ8NEK8
HOGENOMQ8NEK8
Homologs : HomoloGeneFAM46D
Homology/Alignments : Family Browser (UCSC)FAM46D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM46D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM46D
dbVarFAM46D
ClinVarFAM46D
1000_GenomesFAM46D 
Exome Variant ServerFAM46D
ExAC (Exome Aggregation Consortium)FAM46D (select the gene name)
Genetic variants : HAPMAP169966
Genomic Variants (DGV)FAM46D [DGVbeta]
DECIPHERFAM46D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM46D 
Mutations
ICGC Data PortalFAM46D 
TCGA Data PortalFAM46D 
Broad Tumor PortalFAM46D
OASIS PortalFAM46D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM46D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM46D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM46D
DgiDB (Drug Gene Interaction Database)FAM46D
DoCM (Curated mutations)FAM46D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM46D (select a term)
intoGenFAM46D
Cancer3DFAM46D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300976   
Orphanet
MedgenFAM46D
Genetic Testing Registry FAM46D
NextProtQ8NEK8 [Medical]
TSGene169966
GENETestsFAM46D
Target ValidationFAM46D
Huge Navigator FAM46D [HugePedia]
snp3D : Map Gene to Disease169966
BioCentury BCIQFAM46D
ClinGenFAM46D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169966
Chemical/Pharm GKB GenePA134947605
Clinical trialFAM46D
Miscellaneous
canSAR (ICR)FAM46D (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM46D
EVEXFAM46D
GoPubMedFAM46D
iHOPFAM46D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:33:20 CEST 2017

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