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FAM47A (family with sequence similarity 47, member A)

Identity

Alias_namesfamily with sequence similarity 47, member A
Alias_symbol (synonym)MGC27003
Other alias-
HGNC (Hugo) FAM47A
LocusID (NCBI) 158724
Atlas_Id 63201
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 34147869 and ends at 34150447 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM47A   29962
Cards
Entrez_Gene (NCBI)FAM47A  158724  family with sequence similarity 47, member A
Aliases
GeneCards (Weizmann)FAM47A
Ensembl hg19 (Hinxton)ENSG00000185448 [Gene_View]  chrX:34147869-34150447 [Contig_View]  FAM47A [Vega]
Ensembl hg38 (Hinxton)ENSG00000185448 [Gene_View]  chrX:34147869-34150447 [Contig_View]  FAM47A [Vega]
ICGC DataPortalENSG00000185448
TCGA cBioPortalFAM47A
AceView (NCBI)FAM47A
Genatlas (Paris)FAM47A
WikiGenes158724
SOURCE (Princeton)FAM47A
Genetics Home Reference (NIH)FAM47A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM47A  -     chrX:34147869-34150447 -  Xp21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM47A  -     Xp21.1   [Description]    (hg38-Dec_2013)
EnsemblFAM47A - Xp21.1 [CytoView hg19]  FAM47A - Xp21.1 [CytoView hg38]
Mapping of homologs : NCBIFAM47A [Mapview hg19]  FAM47A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI141715 AK292354 BC026171 DB445010
RefSeq transcript (Entrez)NM_203408
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021359 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)FAM47A
Cluster EST : UnigeneHs.143268 [ NCBI ]
CGAP (NCI)Hs.143268
Alternative Splicing GalleryENSG00000185448
Gene ExpressionFAM47A [ NCBI-GEO ]   FAM47A [ EBI - ARRAY_EXPRESS ]   FAM47A [ SEEK ]   FAM47A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM47A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158724
GTEX Portal (Tissue expression)FAM47A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JRC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JRC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JRC9
Splice isoforms : SwissVarQ5JRC9
PhosPhoSitePlusQ5JRC9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM47A
DMDM Disease mutations158724
Blocks (Seattle)FAM47A
SuperfamilyQ5JRC9
Human Protein AtlasENSG00000185448
Peptide AtlasQ5JRC9
HPRD10947
IPIIPI00152022   
Protein Interaction databases
DIP (DOE-UCLA)Q5JRC9
IntAct (EBI)Q5JRC9
FunCoupENSG00000185448
BioGRIDFAM47A
STRING (EMBL)FAM47A
ZODIACFAM47A
Ontologies - Pathways
QuickGOQ5JRC9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM47A
Atlas of Cancer Signalling NetworkFAM47A
Wikipedia pathwaysFAM47A
Orthology - Evolution
OrthoDB158724
GeneTree (enSembl)ENSG00000185448
Phylogenetic Trees/Animal Genes : TreeFamFAM47A
HOVERGENQ5JRC9
HOGENOMQ5JRC9
Homologs : HomoloGeneFAM47A
Homology/Alignments : Family Browser (UCSC)FAM47A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM47A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM47A
dbVarFAM47A
ClinVarFAM47A
1000_GenomesFAM47A 
Exome Variant ServerFAM47A
ExAC (Exome Aggregation Consortium)FAM47A (select the gene name)
Genetic variants : HAPMAP158724
Genomic Variants (DGV)FAM47A [DGVbeta]
DECIPHER (Syndromes)X:34147869-34150447  ENSG00000185448
CONAN: Copy Number AnalysisFAM47A 
Mutations
ICGC Data PortalFAM47A 
TCGA Data PortalFAM47A 
Broad Tumor PortalFAM47A
OASIS PortalFAM47A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM47A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM47A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM47A
DgiDB (Drug Gene Interaction Database)FAM47A
DoCM (Curated mutations)FAM47A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM47A (select a term)
intoGenFAM47A
Cancer3DFAM47A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM47A
Genetic Testing Registry FAM47A
NextProtQ5JRC9 [Medical]
TSGene158724
GENETestsFAM47A
Huge Navigator FAM47A [HugePedia]
snp3D : Map Gene to Disease158724
BioCentury BCIQFAM47A
ClinGenFAM47A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158724
Chemical/Pharm GKB GenePA134944222
Clinical trialFAM47A
Miscellaneous
canSAR (ICR)FAM47A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM47A
EVEXFAM47A
GoPubMedFAM47A
iHOPFAM47A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:11 CET 2017

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