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FAM47B (family with sequence similarity 47 member B)

Identity

Alias_namesfamily with sequence similarity 47, member B
Alias_symbol (synonym)FLJ35782
Other alias-
HGNC (Hugo) FAM47B
LocusID (NCBI) 170062
Atlas_Id 63202
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 34942796 and ends at 34944917 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM47B   26659
Cards
Entrez_Gene (NCBI)FAM47B  170062  family with sequence similarity 47 member B
Aliases
GeneCards (Weizmann)FAM47B
Ensembl hg19 (Hinxton)ENSG00000189132 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189132 [Gene_View]  chrX:34942796-34944917 [Contig_View]  FAM47B [Vega]
ICGC DataPortalENSG00000189132
TCGA cBioPortalFAM47B
AceView (NCBI)FAM47B
Genatlas (Paris)FAM47B
WikiGenes170062
SOURCE (Princeton)FAM47B
Genetics Home Reference (NIH)FAM47B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM47B  -     chrX:34942796-34944917 +  Xp21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM47B  -     Xp21.1   [Description]    (hg19-Feb_2009)
EnsemblFAM47B - Xp21.1 [CytoView hg19]  FAM47B - Xp21.1 [CytoView hg38]
Mapping of homologs : NCBIFAM47B [Mapview hg19]  FAM47B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093101 AL043092 AL043093 BC035026
RefSeq transcript (Entrez)NM_152631
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM47B
Cluster EST : UnigeneHs.197801 [ NCBI ]
CGAP (NCI)Hs.197801
Alternative Splicing GalleryENSG00000189132
Gene ExpressionFAM47B [ NCBI-GEO ]   FAM47B [ EBI - ARRAY_EXPRESS ]   FAM47B [ SEEK ]   FAM47B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM47B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170062
GTEX Portal (Tissue expression)FAM47B
Human Protein AtlasENSG00000189132-FAM47B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA70
Splice isoforms : SwissVarQ8NA70
PhosPhoSitePlusQ8NA70
Domains : Interpro (EBI)FAM47   
Domain families : Pfam (Sanger)FAM47 (PF14642)   
Domain families : Pfam (NCBI)pfam14642   
Conserved Domain (NCBI)FAM47B
DMDM Disease mutations170062
Blocks (Seattle)FAM47B
SuperfamilyQ8NA70
Human Protein Atlas [tissue]ENSG00000189132-FAM47B [tissue]
Peptide AtlasQ8NA70
HPRD06559
IPIIPI00176156   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA70
IntAct (EBI)Q8NA70
FunCoupENSG00000189132
BioGRIDFAM47B
STRING (EMBL)FAM47B
ZODIACFAM47B
Ontologies - Pathways
QuickGOQ8NA70
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM47B
Atlas of Cancer Signalling NetworkFAM47B
Wikipedia pathwaysFAM47B
Orthology - Evolution
OrthoDB170062
GeneTree (enSembl)ENSG00000189132
Phylogenetic Trees/Animal Genes : TreeFamFAM47B
HOVERGENQ8NA70
HOGENOMQ8NA70
Homologs : HomoloGeneFAM47B
Homology/Alignments : Family Browser (UCSC)FAM47B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM47B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM47B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM47B
dbVarFAM47B
ClinVarFAM47B
1000_GenomesFAM47B 
Exome Variant ServerFAM47B
ExAC (Exome Aggregation Consortium)ENSG00000189132
GNOMAD BrowserENSG00000189132
Genetic variants : HAPMAP170062
Genomic Variants (DGV)FAM47B [DGVbeta]
DECIPHERFAM47B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM47B 
Mutations
ICGC Data PortalFAM47B 
TCGA Data PortalFAM47B 
Broad Tumor PortalFAM47B
OASIS PortalFAM47B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM47B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM47B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM47B
DgiDB (Drug Gene Interaction Database)FAM47B
DoCM (Curated mutations)FAM47B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM47B (select a term)
intoGenFAM47B
Cancer3DFAM47B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM47B
MedgenFAM47B
Genetic Testing Registry FAM47B
NextProtQ8NA70 [Medical]
TSGene170062
GENETestsFAM47B
Target ValidationFAM47B
Huge Navigator FAM47B [HugePedia]
snp3D : Map Gene to Disease170062
BioCentury BCIQFAM47B
ClinGenFAM47B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170062
Chemical/Pharm GKB GenePA134969396
Clinical trialFAM47B
Miscellaneous
canSAR (ICR)FAM47B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM47B
EVEXFAM47B
GoPubMedFAM47B
iHOPFAM47B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:29:11 CET 2017

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