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FAM47C (family with sequence similarity 47 member C)

Identity

Alias_namesfamily with sequence similarity 47, member C
Other alias-
HGNC (Hugo) FAM47C
LocusID (NCBI) 442444
Atlas_Id 63203
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 37008359 and ends at 37011666 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM47C   25301
Cards
Entrez_Gene (NCBI)FAM47C  442444  family with sequence similarity 47 member C
Aliases
GeneCards (Weizmann)FAM47C
Ensembl hg19 (Hinxton)ENSG00000198173 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198173 [Gene_View]  chrX:37008359-37011666 [Contig_View]  FAM47C [Vega]
ICGC DataPortalENSG00000198173
TCGA cBioPortalFAM47C
AceView (NCBI)FAM47C
Genatlas (Paris)FAM47C
WikiGenes442444
SOURCE (Princeton)FAM47C
Genetics Home Reference (NIH)FAM47C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM47C  -     chrX:37008359-37011666 +  Xp21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM47C  -     Xp21.1   [Description]    (hg19-Feb_2009)
EnsemblFAM47C - Xp21.1 [CytoView hg19]  FAM47C - Xp21.1 [CytoView hg38]
Mapping of homologs : NCBIFAM47C [Mapview hg19]  FAM47C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125992 DB082026
RefSeq transcript (Entrez)NM_001013736
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM47C
Cluster EST : UnigeneHs.535216 [ NCBI ]
CGAP (NCI)Hs.535216
Alternative Splicing GalleryENSG00000198173
Gene ExpressionFAM47C [ NCBI-GEO ]   FAM47C [ EBI - ARRAY_EXPRESS ]   FAM47C [ SEEK ]   FAM47C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM47C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442444
GTEX Portal (Tissue expression)FAM47C
Human Protein AtlasENSG00000198173-FAM47C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HY64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HY64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HY64
Splice isoforms : SwissVarQ5HY64
PhosPhoSitePlusQ5HY64
Domains : Interpro (EBI)FAM47    FAM47C/D   
Domain families : Pfam (Sanger)FAM47 (PF14642)   
Domain families : Pfam (NCBI)pfam14642   
Conserved Domain (NCBI)FAM47C
DMDM Disease mutations442444
Blocks (Seattle)FAM47C
SuperfamilyQ5HY64
Human Protein Atlas [tissue]ENSG00000198173-FAM47C [tissue]
Peptide AtlasQ5HY64
HPRD18474
IPIIPI00445315   IPI00975937   
Protein Interaction databases
DIP (DOE-UCLA)Q5HY64
IntAct (EBI)Q5HY64
FunCoupENSG00000198173
BioGRIDFAM47C
STRING (EMBL)FAM47C
ZODIACFAM47C
Ontologies - Pathways
QuickGOQ5HY64
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM47C
Atlas of Cancer Signalling NetworkFAM47C
Wikipedia pathwaysFAM47C
Orthology - Evolution
OrthoDB442444
GeneTree (enSembl)ENSG00000198173
Phylogenetic Trees/Animal Genes : TreeFamFAM47C
HOVERGENQ5HY64
HOGENOMQ5HY64
Homologs : HomoloGeneFAM47C
Homology/Alignments : Family Browser (UCSC)FAM47C
Gene fusions - Rearrangements
Tumor Fusion PortalFAM47C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM47C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM47C
dbVarFAM47C
ClinVarFAM47C
1000_GenomesFAM47C 
Exome Variant ServerFAM47C
ExAC (Exome Aggregation Consortium)ENSG00000198173
GNOMAD BrowserENSG00000198173
Genetic variants : HAPMAP442444
Genomic Variants (DGV)FAM47C [DGVbeta]
DECIPHERFAM47C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM47C 
Mutations
ICGC Data PortalFAM47C 
TCGA Data PortalFAM47C 
Broad Tumor PortalFAM47C
OASIS PortalFAM47C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM47C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM47C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM47C
DgiDB (Drug Gene Interaction Database)FAM47C
DoCM (Curated mutations)FAM47C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM47C (select a term)
intoGenFAM47C
Cancer3DFAM47C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM47C
MedgenFAM47C
Genetic Testing Registry FAM47C
NextProtQ5HY64 [Medical]
TSGene442444
GENETestsFAM47C
Target ValidationFAM47C
Huge Navigator FAM47C [HugePedia]
snp3D : Map Gene to Disease442444
BioCentury BCIQFAM47C
ClinGenFAM47C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442444
Chemical/Pharm GKB GenePA145148924
Clinical trialFAM47C
Miscellaneous
canSAR (ICR)FAM47C (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM47C
EVEXFAM47C
GoPubMedFAM47C
iHOPFAM47C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:34 CET 2017

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