Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM47E (family with sequence similarity 47, member E)

Identity

Alias_namesfamily with sequence similarity 47, member E
Alias_symbol (synonym)FLJ42946
LOC100129583
Other alias-
HGNC (Hugo) FAM47E
LocusID (NCBI) 100129583
Atlas_Id 63204
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 77172853 and ends at 77204936 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SHROOM3 (4q21.1) / FAM47E (4q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM47E   34343
Cards
Entrez_Gene (NCBI)FAM47E  100129583  family with sequence similarity 47, member E
Aliases
GeneCards (Weizmann)FAM47E
Ensembl hg19 (Hinxton)ENSG00000189157 [Gene_View]  chr4:77172853-77204936 [Contig_View]  FAM47E [Vega]
Ensembl hg38 (Hinxton)ENSG00000189157 [Gene_View]  chr4:77172853-77204936 [Contig_View]  FAM47E [Vega]
ICGC DataPortalENSG00000189157
TCGA cBioPortalFAM47E
AceView (NCBI)FAM47E
Genatlas (Paris)FAM47E
WikiGenes100129583
SOURCE (Princeton)FAM47E
Genetics Home Reference (NIH)FAM47E
Genomic and cartography
GoldenPath hg19 (UCSC)FAM47E  -     chr4:77172853-77204936 +  4q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM47E  -     4q21.1   [Description]    (hg38-Dec_2013)
EnsemblFAM47E - 4q21.1 [CytoView hg19]  FAM47E - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBIFAM47E [Mapview hg19]  FAM47E [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124936 AK310457 BC020802 BM713546 CR627383
RefSeq transcript (Entrez)NM_001136570 NM_001242936
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)FAM47E
Cluster EST : UnigeneHs.720509 [ NCBI ]
CGAP (NCI)Hs.720509
Alternative Splicing GalleryENSG00000189157
Gene ExpressionFAM47E [ NCBI-GEO ]   FAM47E [ EBI - ARRAY_EXPRESS ]   FAM47E [ SEEK ]   FAM47E [ MEM ]
Gene Expression Viewer (FireBrowse)FAM47E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129583
GTEX Portal (Tissue expression)FAM47E
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZV65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZV65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZV65
Splice isoforms : SwissVarQ6ZV65
PhosPhoSitePlusQ6ZV65
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM47E
DMDM Disease mutations100129583
Blocks (Seattle)FAM47E
SuperfamilyQ6ZV65
Human Protein AtlasENSG00000189157
Peptide AtlasQ6ZV65
IPIIPI00943154   IPI00419097   IPI00887434   IPI00967228   IPI00967618   IPI00964518   IPI00964817   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZV65
IntAct (EBI)Q6ZV65
FunCoupENSG00000189157
BioGRIDFAM47E
STRING (EMBL)FAM47E
ZODIACFAM47E
Ontologies - Pathways
QuickGOQ6ZV65
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM47E
Atlas of Cancer Signalling NetworkFAM47E
Wikipedia pathwaysFAM47E
Orthology - Evolution
OrthoDB100129583
GeneTree (enSembl)ENSG00000189157
Phylogenetic Trees/Animal Genes : TreeFamFAM47E
HOVERGENQ6ZV65
HOGENOMQ6ZV65
Homologs : HomoloGeneFAM47E
Homology/Alignments : Family Browser (UCSC)FAM47E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM47E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM47E
dbVarFAM47E
ClinVarFAM47E
1000_GenomesFAM47E 
Exome Variant ServerFAM47E
ExAC (Exome Aggregation Consortium)FAM47E (select the gene name)
Genetic variants : HAPMAP100129583
Genomic Variants (DGV)FAM47E [DGVbeta]
DECIPHER (Syndromes)4:77172853-77204936  ENSG00000189157
CONAN: Copy Number AnalysisFAM47E 
Mutations
ICGC Data PortalFAM47E 
TCGA Data PortalFAM47E 
Broad Tumor PortalFAM47E
OASIS PortalFAM47E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM47E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM47E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM47E
DgiDB (Drug Gene Interaction Database)FAM47E
DoCM (Curated mutations)FAM47E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM47E (select a term)
intoGenFAM47E
Cancer3DFAM47E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM47E
Genetic Testing Registry FAM47E
NextProtQ6ZV65 [Medical]
TSGene100129583
GENETestsFAM47E
Huge Navigator FAM47E [HugePedia]
snp3D : Map Gene to Disease100129583
BioCentury BCIQFAM47E
ClinGenFAM47E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129583
Chemical/Pharm GKB GenePA162387656
Clinical trialFAM47E
Miscellaneous
canSAR (ICR)FAM47E (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM47E
EVEXFAM47E
GoPubMedFAM47E
iHOPFAM47E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:12 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.