Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM49A (family with sequence similarity 49 member A)

Identity

Alias_namesfamily with sequence similarity 49
Alias_symbol (synonym)DKFZP566A1524
FLJ11080
Other alias-
HGNC (Hugo) FAM49A
LocusID (NCBI) 81553
Atlas_Id 54308
Location 2p24.2  [Link to chromosome band 2p24]
Location_base_pair Starts at 16549462 and ends at 16665866 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM49A (2p24.2) / RIF1 (2q23.3)FAM49A (2p24.2) / ZC3H7B (22q13.2)GRHL2 (8q22.3) / FAM49A (2p24.2)
GRHL2 8q22.3 / FAM49A 2p24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM49A   25373
Cards
Entrez_Gene (NCBI)FAM49A  81553  family with sequence similarity 49 member A
Aliases
GeneCards (Weizmann)FAM49A
Ensembl hg19 (Hinxton)ENSG00000197872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197872 [Gene_View]  chr2:16549462-16665866 [Contig_View]  FAM49A [Vega]
ICGC DataPortalENSG00000197872
TCGA cBioPortalFAM49A
AceView (NCBI)FAM49A
Genatlas (Paris)FAM49A
WikiGenes81553
SOURCE (Princeton)FAM49A
Genetics Home Reference (NIH)FAM49A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM49A  -     chr2:16549462-16665866 -  2p24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM49A  -     2p24.2   [Description]    (hg19-Feb_2009)
EnsemblFAM49A - 2p24.2 [CytoView hg19]  FAM49A - 2p24.2 [CytoView hg38]
Mapping of homologs : NCBIFAM49A [Mapview hg19]  FAM49A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131789 AK001942 AK055334 AK091280 AK315065
RefSeq transcript (Entrez)NM_030797
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM49A
Cluster EST : UnigeneHs.467769 [ NCBI ]
CGAP (NCI)Hs.467769
Alternative Splicing GalleryENSG00000197872
Gene ExpressionFAM49A [ NCBI-GEO ]   FAM49A [ EBI - ARRAY_EXPRESS ]   FAM49A [ SEEK ]   FAM49A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM49A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81553
GTEX Portal (Tissue expression)FAM49A
Human Protein AtlasENSG00000197872-FAM49A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0Q0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0Q0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0Q0
Splice isoforms : SwissVarQ9H0Q0
PhosPhoSitePlusQ9H0Q0
Domains : Interpro (EBI)DUF1394   
Domain families : Pfam (Sanger)DUF1394 (PF07159)   
Domain families : Pfam (NCBI)pfam07159   
Conserved Domain (NCBI)FAM49A
DMDM Disease mutations81553
Blocks (Seattle)FAM49A
SuperfamilyQ9H0Q0
Human Protein Atlas [tissue]ENSG00000197872-FAM49A [tissue]
Peptide AtlasQ9H0Q0
HPRD07729
IPIIPI00006574   IPI00893075   IPI00893895   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0Q0
IntAct (EBI)Q9H0Q0
FunCoupENSG00000197872
BioGRIDFAM49A
STRING (EMBL)FAM49A
ZODIACFAM49A
Ontologies - Pathways
QuickGOQ9H0Q0
Ontology : AmiGOintracellular  
Ontology : EGO-EBIintracellular  
NDEx NetworkFAM49A
Atlas of Cancer Signalling NetworkFAM49A
Wikipedia pathwaysFAM49A
Orthology - Evolution
OrthoDB81553
GeneTree (enSembl)ENSG00000197872
Phylogenetic Trees/Animal Genes : TreeFamFAM49A
HOVERGENQ9H0Q0
HOGENOMQ9H0Q0
Homologs : HomoloGeneFAM49A
Homology/Alignments : Family Browser (UCSC)FAM49A
Gene fusions - Rearrangements
Fusion : MitelmanFAM49A/RIF1 [2p24.2/2q23.3]  
Fusion : MitelmanGRHL2/FAM49A [8q22.3/2p24.2]  [t(2;8)(p24;q22)]  
Fusion: TCGA_MDACCGRHL2 8q22.3 FAM49A 2p24.2 BLCA
Tumor Fusion PortalFAM49A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM49A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM49A
dbVarFAM49A
ClinVarFAM49A
1000_GenomesFAM49A 
Exome Variant ServerFAM49A
ExAC (Exome Aggregation Consortium)ENSG00000197872
GNOMAD BrowserENSG00000197872
Genetic variants : HAPMAP81553
Genomic Variants (DGV)FAM49A [DGVbeta]
DECIPHERFAM49A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM49A 
Mutations
ICGC Data PortalFAM49A 
TCGA Data PortalFAM49A 
Broad Tumor PortalFAM49A
OASIS PortalFAM49A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM49A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM49A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM49A
DgiDB (Drug Gene Interaction Database)FAM49A
DoCM (Curated mutations)FAM49A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM49A (select a term)
intoGenFAM49A
Cancer3DFAM49A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM49A
MedgenFAM49A
Genetic Testing Registry FAM49A
NextProtQ9H0Q0 [Medical]
TSGene81553
GENETestsFAM49A
Target ValidationFAM49A
Huge Navigator FAM49A [HugePedia]
snp3D : Map Gene to Disease81553
BioCentury BCIQFAM49A
ClinGenFAM49A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81553
Chemical/Pharm GKB GenePA128394730
Clinical trialFAM49A
Miscellaneous
canSAR (ICR)FAM49A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM49A
EVEXFAM49A
GoPubMedFAM49A
iHOPFAM49A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:36:13 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.