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FAM50A (family with sequence similarity 50 member A)

Identity

Alias_namesfamily with sequence similarity 50, member A
Alias_symbol (synonym)DXS9928E
XAP5
HXC-26
9F
Other aliasHXC26
HGNC (Hugo) FAM50A
LocusID (NCBI) 9130
Atlas_Id 63207
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154444126 and ends at 154450654 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM26F (6q22.1) / FAM50A (Xq28)FAM50A (Xq28) / FAM26F (6q22.1)FAM50A (Xq28) / FAM50A (Xq28)
FAM50A (Xq28) / HK2 (2p12)FAM50A (Xq28) / RPL5 (1p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM50A   18786
Cards
Entrez_Gene (NCBI)FAM50A  9130  family with sequence similarity 50 member A
Aliases9F; DXS9928E; HXC-26; HXC26; 
XAP5
GeneCards (Weizmann)FAM50A
Ensembl hg19 (Hinxton)ENSG00000071859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000071859 [Gene_View]  chrX:154444126-154450654 [Contig_View]  FAM50A [Vega]
ICGC DataPortalENSG00000071859
TCGA cBioPortalFAM50A
AceView (NCBI)FAM50A
Genatlas (Paris)FAM50A
WikiGenes9130
SOURCE (Princeton)FAM50A
Genetics Home Reference (NIH)FAM50A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM50A  -     chrX:154444126-154450654 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM50A  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblFAM50A - Xq28 [CytoView hg19]  FAM50A - Xq28 [CytoView hg38]
Mapping of homologs : NCBIFAM50A [Mapview hg19]  FAM50A [Mapview hg38]
OMIM300453   
Gene and transcription
Genbank (Entrez)AD001530 AK293119 AK313697 AL365368 AM393325
RefSeq transcript (Entrez)NM_004699
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM50A
Cluster EST : UnigeneHs.54277 [ NCBI ]
CGAP (NCI)Hs.54277
Alternative Splicing GalleryENSG00000071859
Gene ExpressionFAM50A [ NCBI-GEO ]   FAM50A [ EBI - ARRAY_EXPRESS ]   FAM50A [ SEEK ]   FAM50A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM50A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9130
GTEX Portal (Tissue expression)FAM50A
Human Protein AtlasENSG00000071859-FAM50A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14320   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14320  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14320
Splice isoforms : SwissVarQ14320
PhosPhoSitePlusQ14320
Domains : Interpro (EBI)XAP5   
Domain families : Pfam (Sanger)XAP5 (PF04921)   
Domain families : Pfam (NCBI)pfam04921   
Conserved Domain (NCBI)FAM50A
DMDM Disease mutations9130
Blocks (Seattle)FAM50A
SuperfamilyQ14320
Human Protein Atlas [tissue]ENSG00000071859-FAM50A [tissue]
Peptide AtlasQ14320
HPRD02349
IPIIPI00030098   IPI00877867   
Protein Interaction databases
DIP (DOE-UCLA)Q14320
IntAct (EBI)Q14320
FunCoupENSG00000071859
BioGRIDFAM50A
STRING (EMBL)FAM50A
ZODIACFAM50A
Ontologies - Pathways
QuickGOQ14320
Ontology : AmiGORNA binding  nucleus  nucleus  spermatogenesis  
Ontology : EGO-EBIRNA binding  nucleus  nucleus  spermatogenesis  
NDEx NetworkFAM50A
Atlas of Cancer Signalling NetworkFAM50A
Wikipedia pathwaysFAM50A
Orthology - Evolution
OrthoDB9130
GeneTree (enSembl)ENSG00000071859
Phylogenetic Trees/Animal Genes : TreeFamFAM50A
HOVERGENQ14320
HOGENOMQ14320
Homologs : HomoloGeneFAM50A
Homology/Alignments : Family Browser (UCSC)FAM50A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM50A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM50A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM50A
dbVarFAM50A
ClinVarFAM50A
1000_GenomesFAM50A 
Exome Variant ServerFAM50A
ExAC (Exome Aggregation Consortium)ENSG00000071859
GNOMAD BrowserENSG00000071859
Genetic variants : HAPMAP9130
Genomic Variants (DGV)FAM50A [DGVbeta]
DECIPHERFAM50A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM50A 
Mutations
ICGC Data PortalFAM50A 
TCGA Data PortalFAM50A 
Broad Tumor PortalFAM50A
OASIS PortalFAM50A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM50A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM50A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM50A
DgiDB (Drug Gene Interaction Database)FAM50A
DoCM (Curated mutations)FAM50A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM50A (select a term)
intoGenFAM50A
Cancer3DFAM50A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300453   
Orphanet
DisGeNETFAM50A
MedgenFAM50A
Genetic Testing Registry FAM50A
NextProtQ14320 [Medical]
TSGene9130
GENETestsFAM50A
Target ValidationFAM50A
Huge Navigator FAM50A [HugePedia]
snp3D : Map Gene to Disease9130
BioCentury BCIQFAM50A
ClinGenFAM50A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9130
Chemical/Pharm GKB GenePA134984709
Clinical trialFAM50A
Miscellaneous
canSAR (ICR)FAM50A (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM50A
EVEXFAM50A
GoPubMedFAM50A
iHOPFAM50A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:29:12 CET 2017

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