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FAM53A (family with sequence similarity 53 member A)

Identity

Other aliasDNTNP
HGNC (Hugo) FAM53A
LocusID (NCBI) 152877
Atlas_Id 57200
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 1639881 and ends at 1684127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WHSC1 (4p16.3) / FAM53A (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM53A   31860
Cards
Entrez_Gene (NCBI)FAM53A  152877  family with sequence similarity 53 member A
AliasesDNTNP
GeneCards (Weizmann)FAM53A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:1639881-1684127 [Contig_View]  FAM53A [Vega]
TCGA cBioPortalFAM53A
AceView (NCBI)FAM53A
Genatlas (Paris)FAM53A
WikiGenes152877
SOURCE (Princeton)FAM53A
Genetics Home Reference (NIH)FAM53A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM53A  -     chr4:1639881-1684127 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM53A  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblFAM53A - 4p16.3 [CytoView hg19]  FAM53A - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIFAM53A [Mapview hg19]  FAM53A [Mapview hg38]
OMIM617229   
Gene and transcription
Genbank (Entrez)AK093972 AK125566 BC042071 BC070112 BM676712
RefSeq transcript (Entrez)NM_001013622 NM_001174070 NM_001297435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM53A
Cluster EST : UnigeneHs.192784 [ NCBI ]
CGAP (NCI)Hs.192784
Gene ExpressionFAM53A [ NCBI-GEO ]   FAM53A [ EBI - ARRAY_EXPRESS ]   FAM53A [ SEEK ]   FAM53A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM53A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152877
GTEX Portal (Tissue expression)FAM53A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NSI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NSI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NSI3
Splice isoforms : SwissVarQ6NSI3
PhosPhoSitePlusQ6NSI3
Domains : Interpro (EBI)FAM53   
Domain families : Pfam (Sanger)FAM53 (PF15242)   
Domain families : Pfam (NCBI)pfam15242   
Conserved Domain (NCBI)FAM53A
DMDM Disease mutations152877
Blocks (Seattle)FAM53A
SuperfamilyQ6NSI3
Peptide AtlasQ6NSI3
IPIIPI00095578   IPI00947054   IPI00947358   IPI00966548   
Protein Interaction databases
DIP (DOE-UCLA)Q6NSI3
IntAct (EBI)Q6NSI3
BioGRIDFAM53A
STRING (EMBL)FAM53A
ZODIACFAM53A
Ontologies - Pathways
QuickGOQ6NSI3
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFAM53A
Atlas of Cancer Signalling NetworkFAM53A
Wikipedia pathwaysFAM53A
Orthology - Evolution
OrthoDB152877
Phylogenetic Trees/Animal Genes : TreeFamFAM53A
HOVERGENQ6NSI3
HOGENOMQ6NSI3
Homologs : HomoloGeneFAM53A
Homology/Alignments : Family Browser (UCSC)FAM53A
Gene fusions - Rearrangements
Fusion : QuiverFAM53A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM53A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM53A
dbVarFAM53A
ClinVarFAM53A
1000_GenomesFAM53A 
Exome Variant ServerFAM53A
Genetic variants : HAPMAP152877
Genomic Variants (DGV)FAM53A [DGVbeta]
DECIPHERFAM53A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM53A 
Mutations
ICGC Data PortalFAM53A 
TCGA Data PortalFAM53A 
Broad Tumor PortalFAM53A
OASIS PortalFAM53A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM53A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM53A
BioMutasearch FAM53A
DgiDB (Drug Gene Interaction Database)FAM53A
DoCM (Curated mutations)FAM53A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM53A (select a term)
intoGenFAM53A
Cancer3DFAM53A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617229   
Orphanet
DisGeNETFAM53A
MedgenFAM53A
Genetic Testing Registry FAM53A
NextProtQ6NSI3 [Medical]
TSGene152877
GENETestsFAM53A
Target ValidationFAM53A
Huge Navigator FAM53A [HugePedia]
snp3D : Map Gene to Disease152877
BioCentury BCIQFAM53A
ClinGenFAM53A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152877
Chemical/Pharm GKB GenePA142671887
Clinical trialFAM53A
Miscellaneous
canSAR (ICR)FAM53A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM53A
EVEXFAM53A
GoPubMedFAM53A
iHOPFAM53A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 28 13:12:07 CET 2018

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