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FAM57B (family with sequence similarity 57 member B)

Identity

Alias_namesfamily with sequence similarity 57, member B
Alias_symbol (synonym)DKFZP434I2117
Other aliasFP1188
HGNC (Hugo) FAM57B
LocusID (NCBI) 83723
Atlas_Id 63212
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30024423 and ends at 30030084 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM57B   25295
Cards
Entrez_Gene (NCBI)FAM57B  83723  family with sequence similarity 57 member B
AliasesFP1188
GeneCards (Weizmann)FAM57B
Ensembl hg19 (Hinxton)ENSG00000149926 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149926 [Gene_View]  chr16:30024423-30030084 [Contig_View]  FAM57B [Vega]
ICGC DataPortalENSG00000149926
TCGA cBioPortalFAM57B
AceView (NCBI)FAM57B
Genatlas (Paris)FAM57B
WikiGenes83723
SOURCE (Princeton)FAM57B
Genetics Home Reference (NIH)FAM57B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM57B  -     chr16:30024423-30030084 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM57B  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblFAM57B - 16p11.2 [CytoView hg19]  FAM57B - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIFAM57B [Mapview hg19]  FAM57B [Mapview hg38]
OMIM615175   
Gene and transcription
Genbank (Entrez)AB593089 AB593090 AF370365 AK097527 AL136777
RefSeq transcript (Entrez)NM_001318504 NM_031478
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM57B
Cluster EST : UnigeneHs.736831 [ NCBI ]
CGAP (NCI)Hs.736831
Alternative Splicing GalleryENSG00000149926
Gene ExpressionFAM57B [ NCBI-GEO ]   FAM57B [ EBI - ARRAY_EXPRESS ]   FAM57B [ SEEK ]   FAM57B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM57B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83723
GTEX Portal (Tissue expression)FAM57B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71RH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71RH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71RH2
Splice isoforms : SwissVarQ71RH2
PhosPhoSitePlusQ71RH2
Domaine pattern : Prosite (Expaxy)TLC (PS50922)   
Domains : Interpro (EBI)TLC-dom   
Domain families : Pfam (Sanger)TRAM_LAG1_CLN8 (PF03798)   
Domain families : Pfam (NCBI)pfam03798   
Domain families : Smart (EMBL)TLC (SM00724)  
Conserved Domain (NCBI)FAM57B
DMDM Disease mutations83723
Blocks (Seattle)FAM57B
SuperfamilyQ71RH2
Human Protein AtlasENSG00000149926
Peptide AtlasQ71RH2
HPRD13156
IPIIPI00027823   IPI00550713   
Protein Interaction databases
DIP (DOE-UCLA)Q71RH2
IntAct (EBI)Q71RH2
FunCoupENSG00000149926
BioGRIDFAM57B
STRING (EMBL)FAM57B
ZODIACFAM57B
Ontologies - Pathways
QuickGOQ71RH2
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  negative regulation of fat cell differentiation  ceramide biosynthetic process  sphingosine N-acyltransferase activity  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  negative regulation of fat cell differentiation  ceramide biosynthetic process  sphingosine N-acyltransferase activity  
NDEx NetworkFAM57B
Atlas of Cancer Signalling NetworkFAM57B
Wikipedia pathwaysFAM57B
Orthology - Evolution
OrthoDB83723
GeneTree (enSembl)ENSG00000149926
Phylogenetic Trees/Animal Genes : TreeFamFAM57B
HOVERGENQ71RH2
HOGENOMQ71RH2
Homologs : HomoloGeneFAM57B
Homology/Alignments : Family Browser (UCSC)FAM57B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM57B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM57B
dbVarFAM57B
ClinVarFAM57B
1000_GenomesFAM57B 
Exome Variant ServerFAM57B
ExAC (Exome Aggregation Consortium)FAM57B (select the gene name)
Genetic variants : HAPMAP83723
Genomic Variants (DGV)FAM57B [DGVbeta]
DECIPHERFAM57B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM57B 
Mutations
ICGC Data PortalFAM57B 
TCGA Data PortalFAM57B 
Broad Tumor PortalFAM57B
OASIS PortalFAM57B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM57B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM57B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM57B
DgiDB (Drug Gene Interaction Database)FAM57B
DoCM (Curated mutations)FAM57B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM57B (select a term)
intoGenFAM57B
Cancer3DFAM57B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615175   
Orphanet
MedgenFAM57B
Genetic Testing Registry FAM57B
NextProtQ71RH2 [Medical]
TSGene83723
GENETestsFAM57B
Huge Navigator FAM57B [HugePedia]
snp3D : Map Gene to Disease83723
BioCentury BCIQFAM57B
ClinGenFAM57B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83723
Chemical/Pharm GKB GenePA142671862
Clinical trialFAM57B
Miscellaneous
canSAR (ICR)FAM57B (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM57B
EVEXFAM57B
GoPubMedFAM57B
iHOPFAM57B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:11:28 CEST 2017

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