Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM58BP (cyclin-related protein FAM58B)

Identity

Alias_namesFAM58B
family with sequence similarity 58, member B
family with sequence similarity 58, member B, pseudogene
Other alias
HGNC (Hugo) FAM58BP
LocusID (NCBI) 339521
Atlas_Id 63214
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 200182691 and ends at 200183454 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)FAM58BP   27373
Cards
Entrez_Gene (NCBI)FAM58BP  339521  cyclin-related protein FAM58B
AliasesFAM58B
GeneCards (Weizmann)FAM58BP
Ensembl hg19 (Hinxton) [Gene_View]  chr1:200182691-200183454 [Contig_View]  FAM58BP [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:200182691-200183454 [Contig_View]  FAM58BP [Vega]
TCGA cBioPortalFAM58BP
AceView (NCBI)FAM58BP
Genatlas (Paris)FAM58BP
WikiGenes339521
SOURCE (Princeton)FAM58BP
Genetics Home Reference (NIH)FAM58BP
Genomic and cartography
GoldenPath hg19 (UCSC)FAM58BP  -     chr1:200182691-200183454 +  1q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM58BP  -     1q32.1   [Description]    (hg38-Dec_2013)
EnsemblFAM58BP - 1q32.1 [CytoView hg19]  FAM58BP - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIFAM58BP [Mapview hg19]  FAM58BP [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC172299
RefSeq transcript (Entrez)NM_001105517
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_033015 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)FAM58BP
Gene ExpressionFAM58BP [ NCBI-GEO ]   FAM58BP [ EBI - ARRAY_EXPRESS ]   FAM58BP [ SEEK ]   FAM58BP [ MEM ]
Gene Expression Viewer (FireBrowse)FAM58BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339521
GTEX Portal (Tissue expression)FAM58BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7Q3
Splice isoforms : SwissVarP0C7Q3
PhosPhoSitePlusP0C7Q3
Domains : Interpro (EBI)Cyclin-like    Cyclin-rel_FAM58    Cyclin_C/H/T/L    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
Conserved Domain (NCBI)FAM58BP
DMDM Disease mutations339521
Blocks (Seattle)FAM58BP
SuperfamilyP0C7Q3
Peptide AtlasP0C7Q3
IPIIPI00383232   
Protein Interaction databases
DIP (DOE-UCLA)P0C7Q3
IntAct (EBI)P0C7Q3
BioGRIDFAM58BP
STRING (EMBL)FAM58BP
ZODIACFAM58BP
Ontologies - Pathways
QuickGOP0C7Q3
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  regulation of transcription, DNA-templated  protein kinase binding  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  regulation of transcription, DNA-templated  protein kinase binding  
NDEx NetworkFAM58BP
Atlas of Cancer Signalling NetworkFAM58BP
Wikipedia pathwaysFAM58BP
Orthology - Evolution
OrthoDB339521
Phylogenetic Trees/Animal Genes : TreeFamFAM58BP
HOVERGENP0C7Q3
HOGENOMP0C7Q3
Homologs : HomoloGeneFAM58BP
Homology/Alignments : Family Browser (UCSC)FAM58BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM58BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM58BP
dbVarFAM58BP
ClinVarFAM58BP
1000_GenomesFAM58BP 
Exome Variant ServerFAM58BP
ExAC (Exome Aggregation Consortium)FAM58BP (select the gene name)
Genetic variants : HAPMAP339521
Genomic Variants (DGV)FAM58BP [DGVbeta]
DECIPHER (Syndromes)1:200182691-200183454  
CONAN: Copy Number AnalysisFAM58BP 
Mutations
ICGC Data PortalFAM58BP 
TCGA Data PortalFAM58BP 
Broad Tumor PortalFAM58BP
OASIS PortalFAM58BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM58BP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM58BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM58BP
DgiDB (Drug Gene Interaction Database)FAM58BP
DoCM (Curated mutations)FAM58BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM58BP (select a term)
intoGenFAM58BP
Cancer3DFAM58BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM58BP
Genetic Testing Registry FAM58BP
NextProtP0C7Q3 [Medical]
TSGene339521
GENETestsFAM58BP
Huge Navigator FAM58BP [HugePedia]
snp3D : Map Gene to Disease339521
BioCentury BCIQFAM58BP
ClinGenFAM58BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339521
Chemical/Pharm GKB GenePA142671864
Clinical trialFAM58BP
Miscellaneous
canSAR (ICR)FAM58BP (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM58BP
EVEXFAM58BP
GoPubMedFAM58BP
iHOPFAM58BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:14 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.