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FAM60A (family with sequence similarity 60 member A)

Identity

Alias_namesC12orf14
chromosome 12 open reading frame 14
family with sequence similarity 60, member A
Alias_symbol (synonym)TERA
Other aliasL4
HGNC (Hugo) FAM60A
LocusID (NCBI) 58516
Atlas_Id 63215
Location 12p11.21  [Link to chromosome band 12p11]
Location_base_pair Starts at 31280586 and ends at 31326187 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CROCC (1p36.13) / FAM60A (12p11.21)FAM60A (12p11.21) / CD27 (12p13.31)FAM60A (12p11.21) / COA1 (7p13)
FAM60A CD27FAM60A C7orf44

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM60A   30702
Cards
Entrez_Gene (NCBI)FAM60A  58516  family with sequence similarity 60 member A
AliasesC12orf14; L4; TERA
GeneCards (Weizmann)FAM60A
Ensembl hg19 (Hinxton)ENSG00000139146 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139146 [Gene_View]  chr12:31280586-31326187 [Contig_View]  FAM60A [Vega]
ICGC DataPortalENSG00000139146
TCGA cBioPortalFAM60A
AceView (NCBI)FAM60A
Genatlas (Paris)FAM60A
WikiGenes58516
SOURCE (Princeton)FAM60A
Genetics Home Reference (NIH)FAM60A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM60A  -     chr12:31280586-31326187 -  12p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM60A  -     12p11.21   [Description]    (hg19-Feb_2009)
EnsemblFAM60A - 12p11.21 [CytoView hg19]  FAM60A - 12p11.21 [CytoView hg38]
Mapping of homologs : NCBIFAM60A [Mapview hg19]  FAM60A [Mapview hg38]
OMIM615027   
Gene and transcription
Genbank (Entrez)AF087885 AF212220 AK026932 AK027736 AK294457
RefSeq transcript (Entrez)NM_001135811 NM_001135812 NM_021238
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187587
Consensus coding sequences : CCDS (NCBI)FAM60A
Cluster EST : UnigeneHs.505154 [ NCBI ]
CGAP (NCI)Hs.505154
Alternative Splicing GalleryENSG00000139146
Gene ExpressionFAM60A [ NCBI-GEO ]   FAM60A [ EBI - ARRAY_EXPRESS ]   FAM60A [ SEEK ]   FAM60A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM60A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58516
GTEX Portal (Tissue expression)FAM60A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP50
Splice isoforms : SwissVarQ9NP50
PhosPhoSitePlusQ9NP50
Domains : Interpro (EBI)FAM60A   
Domain families : Pfam (Sanger)FAM60A (PF15396)   
Domain families : Pfam (NCBI)pfam15396   
Conserved Domain (NCBI)FAM60A
DMDM Disease mutations58516
Blocks (Seattle)FAM60A
SuperfamilyQ9NP50
Human Protein AtlasENSG00000139146
Peptide AtlasQ9NP50
HPRD16588
IPIIPI01014821   IPI00607866   IPI00639887   IPI01013733   IPI01014002   IPI01013712   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP50
IntAct (EBI)Q9NP50
FunCoupENSG00000139146
BioGRIDFAM60A
STRING (EMBL)FAM60A
ZODIACFAM60A
Ontologies - Pathways
QuickGOQ9NP50
Ontology : AmiGOprotein binding  Sin3 complex  negative regulation of cell migration  
Ontology : EGO-EBIprotein binding  Sin3 complex  negative regulation of cell migration  
NDEx NetworkFAM60A
Atlas of Cancer Signalling NetworkFAM60A
Wikipedia pathwaysFAM60A
Orthology - Evolution
OrthoDB58516
GeneTree (enSembl)ENSG00000139146
Phylogenetic Trees/Animal Genes : TreeFamFAM60A
HOVERGENQ9NP50
HOGENOMQ9NP50
Homologs : HomoloGeneFAM60A
Homology/Alignments : Family Browser (UCSC)FAM60A
Gene fusions - Rearrangements
Fusion: TCGAFAM60A CD27
Fusion: TCGAFAM60A C7orf44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM60A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM60A
dbVarFAM60A
ClinVarFAM60A
1000_GenomesFAM60A 
Exome Variant ServerFAM60A
ExAC (Exome Aggregation Consortium)FAM60A (select the gene name)
Genetic variants : HAPMAP58516
Genomic Variants (DGV)FAM60A [DGVbeta]
DECIPHERFAM60A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM60A 
Mutations
ICGC Data PortalFAM60A 
TCGA Data PortalFAM60A 
Broad Tumor PortalFAM60A
OASIS PortalFAM60A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM60A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM60A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM60A
DgiDB (Drug Gene Interaction Database)FAM60A
DoCM (Curated mutations)FAM60A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM60A (select a term)
intoGenFAM60A
Cancer3DFAM60A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615027   
Orphanet
MedgenFAM60A
Genetic Testing Registry FAM60A
NextProtQ9NP50 [Medical]
TSGene58516
GENETestsFAM60A
Target ValidationFAM60A
Huge Navigator FAM60A [HugePedia]
snp3D : Map Gene to Disease58516
BioCentury BCIQFAM60A
ClinGenFAM60A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58516
Chemical/Pharm GKB GenePA134921007
Clinical trialFAM60A
Miscellaneous
canSAR (ICR)FAM60A (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM60A
EVEXFAM60A
GoPubMedFAM60A
iHOPFAM60A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:38 CEST 2017

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