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FAM63A (family with sequence similarity 63, member A)

Identity

Alias_namesfamily with sequence similarity 63, member A
Alias_symbol (synonym)FLJ11280
MINDY-1
Other alias-
HGNC (Hugo) FAM63A
LocusID (NCBI) 55793
Atlas_Id 63216
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 150969301 and ends at 150979385 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
L3MBTL3 (6q23.1) / FAM63A (1q21.3)PTGDS (9q34.3) / FAM63A (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM63A   25648
Cards
Entrez_Gene (NCBI)FAM63A  55793  family with sequence similarity 63, member A
Aliases
GeneCards (Weizmann)FAM63A
Ensembl hg19 (Hinxton)ENSG00000143409 [Gene_View]  chr1:150969301-150979385 [Contig_View]  FAM63A [Vega]
Ensembl hg38 (Hinxton)ENSG00000143409 [Gene_View]  chr1:150969301-150979385 [Contig_View]  FAM63A [Vega]
ICGC DataPortalENSG00000143409
TCGA cBioPortalFAM63A
AceView (NCBI)FAM63A
Genatlas (Paris)FAM63A
WikiGenes55793
SOURCE (Princeton)FAM63A
Genetics Home Reference (NIH)FAM63A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM63A  -     chr1:150969301-150979385 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM63A  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblFAM63A - 1q21.3 [CytoView hg19]  FAM63A - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIFAM63A [Mapview hg19]  FAM63A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037811 AK002142 AK125493 AK125959 AK301946
RefSeq transcript (Entrez)NM_001040217 NM_001163258 NM_001163259 NM_001163260 NM_018379
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)FAM63A
Cluster EST : UnigeneHs.743952 [ NCBI ]
CGAP (NCI)Hs.743952
Alternative Splicing GalleryENSG00000143409
Gene ExpressionFAM63A [ NCBI-GEO ]   FAM63A [ EBI - ARRAY_EXPRESS ]   FAM63A [ SEEK ]   FAM63A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM63A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55793
GTEX Portal (Tissue expression)FAM63A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5J2
Splice isoforms : SwissVarQ8N5J2
PhosPhoSitePlusQ8N5J2
Domains : Interpro (EBI)DUF544   
Domain families : Pfam (Sanger)DUF544 (PF04424)   
Domain families : Pfam (NCBI)pfam04424   
Conserved Domain (NCBI)FAM63A
DMDM Disease mutations55793
Blocks (Seattle)FAM63A
SuperfamilyQ8N5J2
Human Protein AtlasENSG00000143409
Peptide AtlasQ8N5J2
HPRD07746
IPIIPI00413164   IPI00646860   IPI00292905   IPI00929269   IPI01025646   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5J2
IntAct (EBI)Q8N5J2
FunCoupENSG00000143409
BioGRIDFAM63A
STRING (EMBL)FAM63A
ZODIACFAM63A
Ontologies - Pathways
QuickGOQ8N5J2
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  biological_process  extracellular exosome  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  biological_process  extracellular exosome  
NDEx NetworkFAM63A
Atlas of Cancer Signalling NetworkFAM63A
Wikipedia pathwaysFAM63A
Orthology - Evolution
OrthoDB55793
GeneTree (enSembl)ENSG00000143409
Phylogenetic Trees/Animal Genes : TreeFamFAM63A
HOVERGENQ8N5J2
HOGENOMQ8N5J2
Homologs : HomoloGeneFAM63A
Homology/Alignments : Family Browser (UCSC)FAM63A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM63A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM63A
dbVarFAM63A
ClinVarFAM63A
1000_GenomesFAM63A 
Exome Variant ServerFAM63A
ExAC (Exome Aggregation Consortium)FAM63A (select the gene name)
Genetic variants : HAPMAP55793
Genomic Variants (DGV)FAM63A [DGVbeta]
DECIPHER (Syndromes)1:150969301-150979385  ENSG00000143409
CONAN: Copy Number AnalysisFAM63A 
Mutations
ICGC Data PortalFAM63A 
TCGA Data PortalFAM63A 
Broad Tumor PortalFAM63A
OASIS PortalFAM63A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM63A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM63A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM63A
DgiDB (Drug Gene Interaction Database)FAM63A
DoCM (Curated mutations)FAM63A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM63A (select a term)
intoGenFAM63A
Cancer3DFAM63A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM63A
Genetic Testing Registry FAM63A
NextProtQ8N5J2 [Medical]
TSGene55793
GENETestsFAM63A
Huge Navigator FAM63A [HugePedia]
snp3D : Map Gene to Disease55793
BioCentury BCIQFAM63A
ClinGenFAM63A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55793
Chemical/Pharm GKB GenePA142671872
Clinical trialFAM63A
Miscellaneous
canSAR (ICR)FAM63A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM63A
EVEXFAM63A
GoPubMedFAM63A
iHOPFAM63A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:15 CET 2017

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