Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM63B (family with sequence similarity 63, member B)

Identity

Alias_namesfamily with sequence similarity 63, member B
Alias_symbol (synonym)KIAA1164
Other alias-
HGNC (Hugo) FAM63B
LocusID (NCBI) 54629
Atlas_Id 63217
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 59063393 and ends at 59149734 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM63B (15q21.3) / PHAX (5q23.2)FAM63B (15q21.3) / TMEM94 (17q25.1)KRT13 (17q21.2) / FAM63B (15q21.3)
LOC284454 (19p13.13) / FAM63B (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM63B   26954
Cards
Entrez_Gene (NCBI)FAM63B  54629  family with sequence similarity 63, member B
Aliases
GeneCards (Weizmann)FAM63B
Ensembl hg19 (Hinxton)ENSG00000128923 [Gene_View]  chr15:59063393-59149734 [Contig_View]  FAM63B [Vega]
Ensembl hg38 (Hinxton)ENSG00000128923 [Gene_View]  chr15:59063393-59149734 [Contig_View]  FAM63B [Vega]
ICGC DataPortalENSG00000128923
TCGA cBioPortalFAM63B
AceView (NCBI)FAM63B
Genatlas (Paris)FAM63B
WikiGenes54629
SOURCE (Princeton)FAM63B
Genetics Home Reference (NIH)FAM63B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM63B  -     chr15:59063393-59149734 +  15q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM63B  -     15q21.3   [Description]    (hg38-Dec_2013)
EnsemblFAM63B - 15q21.3 [CytoView hg19]  FAM63B - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIFAM63B [Mapview hg19]  FAM63B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB032990 AB075509 AK021710 AK022891 AK075319
RefSeq transcript (Entrez)NM_001040450 NM_001040453 NM_019092
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)FAM63B
Cluster EST : UnigeneHs.595286 [ NCBI ]
CGAP (NCI)Hs.595286
Alternative Splicing GalleryENSG00000128923
Gene ExpressionFAM63B [ NCBI-GEO ]   FAM63B [ EBI - ARRAY_EXPRESS ]   FAM63B [ SEEK ]   FAM63B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM63B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54629
GTEX Portal (Tissue expression)FAM63B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBR6
Splice isoforms : SwissVarQ8NBR6
PhosPhoSitePlusQ8NBR6
Domains : Interpro (EBI)DUF544   
Domain families : Pfam (Sanger)DUF544 (PF04424)   
Domain families : Pfam (NCBI)pfam04424   
Conserved Domain (NCBI)FAM63B
DMDM Disease mutations54629
Blocks (Seattle)FAM63B
SuperfamilyQ8NBR6
Human Protein AtlasENSG00000128923
Peptide AtlasQ8NBR6
HPRD13835
IPIIPI00744140   IPI00748812   IPI00654835   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBR6
IntAct (EBI)Q8NBR6
FunCoupENSG00000128923
BioGRIDFAM63B
STRING (EMBL)FAM63B
ZODIACFAM63B
Ontologies - Pathways
QuickGOQ8NBR6
Ontology : AmiGOmolecular_function  cellular_component  nucleoplasm  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  nucleoplasm  biological_process  
NDEx NetworkFAM63B
Atlas of Cancer Signalling NetworkFAM63B
Wikipedia pathwaysFAM63B
Orthology - Evolution
OrthoDB54629
GeneTree (enSembl)ENSG00000128923
Phylogenetic Trees/Animal Genes : TreeFamFAM63B
HOVERGENQ8NBR6
HOGENOMQ8NBR6
Homologs : HomoloGeneFAM63B
Homology/Alignments : Family Browser (UCSC)FAM63B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM63B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM63B
dbVarFAM63B
ClinVarFAM63B
1000_GenomesFAM63B 
Exome Variant ServerFAM63B
ExAC (Exome Aggregation Consortium)FAM63B (select the gene name)
Genetic variants : HAPMAP54629
Genomic Variants (DGV)FAM63B [DGVbeta]
DECIPHER (Syndromes)15:59063393-59149734  ENSG00000128923
CONAN: Copy Number AnalysisFAM63B 
Mutations
ICGC Data PortalFAM63B 
TCGA Data PortalFAM63B 
Broad Tumor PortalFAM63B
OASIS PortalFAM63B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM63B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM63B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM63B
DgiDB (Drug Gene Interaction Database)FAM63B
DoCM (Curated mutations)FAM63B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM63B (select a term)
intoGenFAM63B
Cancer3DFAM63B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM63B
Genetic Testing Registry FAM63B
NextProtQ8NBR6 [Medical]
TSGene54629
GENETestsFAM63B
Huge Navigator FAM63B [HugePedia]
snp3D : Map Gene to Disease54629
BioCentury BCIQFAM63B
ClinGenFAM63B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54629
Chemical/Pharm GKB GenePA142671873
Clinical trialFAM63B
Miscellaneous
canSAR (ICR)FAM63B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM63B
EVEXFAM63B
GoPubMedFAM63B
iHOPFAM63B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:15 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.