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FAM65A (family with sequence similarity 65, member A)

Identity

Alias_namesfamily with sequence similarity 65, member A
Alias_symbol (synonym)FLJ13725
Other alias-
HGNC (Hugo) FAM65A
LocusID (NCBI) 79567
Atlas_Id 63218
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67562720 and ends at 67580691 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COTL1 (16q24.1) / FAM65A (16q22.1)FAM65A (16q22.1) / ADCY2 (5p15.31)FAM65A (16q22.1) / EGFR (7p11.2)
FAM65A (16q22.1) / LRRC36 (16q22.1)PLCB3 (11q13.1) / FAM65A (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM65A   25836
Cards
Entrez_Gene (NCBI)FAM65A  79567  family with sequence similarity 65, member A
Aliases
GeneCards (Weizmann)FAM65A
Ensembl hg19 (Hinxton)ENSG00000039523 [Gene_View]  chr16:67562720-67580691 [Contig_View]  FAM65A [Vega]
Ensembl hg38 (Hinxton)ENSG00000039523 [Gene_View]  chr16:67562720-67580691 [Contig_View]  FAM65A [Vega]
ICGC DataPortalENSG00000039523
TCGA cBioPortalFAM65A
AceView (NCBI)FAM65A
Genatlas (Paris)FAM65A
WikiGenes79567
SOURCE (Princeton)FAM65A
Genetics Home Reference (NIH)FAM65A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM65A  -     chr16:67562720-67580691 +  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM65A  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblFAM65A - 16q22.1 [CytoView hg19]  FAM65A - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM65A [Mapview hg19]  FAM65A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067517 AK023787 AK097087 AK127792 AK293748
RefSeq transcript (Entrez)NM_001193522 NM_001193523 NM_001193524 NM_024519
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)FAM65A
Cluster EST : UnigeneHs.152717 [ NCBI ]
CGAP (NCI)Hs.152717
Alternative Splicing GalleryENSG00000039523
Gene ExpressionFAM65A [ NCBI-GEO ]   FAM65A [ EBI - ARRAY_EXPRESS ]   FAM65A [ SEEK ]   FAM65A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM65A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79567
GTEX Portal (Tissue expression)FAM65A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS17
Splice isoforms : SwissVarQ6ZS17
PhosPhoSitePlusQ6ZS17
Domains : Interpro (EBI)ARM-like    ARM-type_fold    FAM65   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM65A
DMDM Disease mutations79567
Blocks (Seattle)FAM65A
SuperfamilyQ6ZS17
Human Protein AtlasENSG00000039523
Peptide AtlasQ6ZS17
HPRD08586
IPIIPI00418799   IPI00793685   IPI00878206   IPI01008894   IPI00641076   IPI00807596   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS17
IntAct (EBI)Q6ZS17
FunCoupENSG00000039523
BioGRIDFAM65A
STRING (EMBL)FAM65A
ZODIACFAM65A
Ontologies - Pathways
QuickGOQ6ZS17
Ontology : AmiGOmolecular_function  cytoplasm  cytoplasm  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  cytoplasm  cytoplasm  biological_process  extracellular exosome  
NDEx NetworkFAM65A
Atlas of Cancer Signalling NetworkFAM65A
Wikipedia pathwaysFAM65A
Orthology - Evolution
OrthoDB79567
GeneTree (enSembl)ENSG00000039523
Phylogenetic Trees/Animal Genes : TreeFamFAM65A
HOVERGENQ6ZS17
HOGENOMQ6ZS17
Homologs : HomoloGeneFAM65A
Homology/Alignments : Family Browser (UCSC)FAM65A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM65A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM65A
dbVarFAM65A
ClinVarFAM65A
1000_GenomesFAM65A 
Exome Variant ServerFAM65A
ExAC (Exome Aggregation Consortium)FAM65A (select the gene name)
Genetic variants : HAPMAP79567
Genomic Variants (DGV)FAM65A [DGVbeta]
DECIPHER (Syndromes)16:67562720-67580691  ENSG00000039523
CONAN: Copy Number AnalysisFAM65A 
Mutations
ICGC Data PortalFAM65A 
TCGA Data PortalFAM65A 
Broad Tumor PortalFAM65A
OASIS PortalFAM65A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM65A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM65A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM65A
DgiDB (Drug Gene Interaction Database)FAM65A
DoCM (Curated mutations)FAM65A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM65A (select a term)
intoGenFAM65A
Cancer3DFAM65A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM65A
Genetic Testing Registry FAM65A
NextProtQ6ZS17 [Medical]
TSGene79567
GENETestsFAM65A
Huge Navigator FAM65A [HugePedia]
snp3D : Map Gene to Disease79567
BioCentury BCIQFAM65A
ClinGenFAM65A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79567
Chemical/Pharm GKB GenePA142671875
Clinical trialFAM65A
Miscellaneous
canSAR (ICR)FAM65A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM65A
EVEXFAM65A
GoPubMedFAM65A
iHOPFAM65A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:15 CET 2017

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