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FAM65C (family with sequence similarity 65 member C)

Identity

Alias_namesC20orf175
C20orf176
chromosome 20 open reading frame 175
chromosome 20 open reading frame 176
family with sequence similarity 65, member C
Alias_symbol (synonym)dJ530I15.2
dJ530I15.3
Other alias
HGNC (Hugo) FAM65C
LocusID (NCBI) 140876
Atlas_Id 54311
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49202645 and ends at 49308067 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EIF3H (8q23.3) / FAM65C (20q13.13)ESCO1 (18q11.2) / FAM65C (20q13.13)PRKAR1A (17q24.2) / FAM65C (20q13.13)
ESCO1 18q11.2 / FAM65C 20q13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM65C   16168
Cards
Entrez_Gene (NCBI)FAM65C  140876  family with sequence similarity 65 member C
AliasesC20orf175; C20orf176
GeneCards (Weizmann)FAM65C
Ensembl hg19 (Hinxton)ENSG00000042062 [Gene_View]  chr20:49202645-49308067 [Contig_View]  FAM65C [Vega]
Ensembl hg38 (Hinxton)ENSG00000042062 [Gene_View]  chr20:49202645-49308067 [Contig_View]  FAM65C [Vega]
ICGC DataPortalENSG00000042062
TCGA cBioPortalFAM65C
AceView (NCBI)FAM65C
Genatlas (Paris)FAM65C
WikiGenes140876
SOURCE (Princeton)FAM65C
Genetics Home Reference (NIH)FAM65C
Genomic and cartography
GoldenPath hg19 (UCSC)FAM65C  -     chr20:49202645-49308067 -  20q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM65C  -     20q13.13   [Description]    (hg38-Dec_2013)
EnsemblFAM65C - 20q13.13 [CytoView hg19]  FAM65C - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBIFAM65C [Mapview hg19]  FAM65C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI056877 AK056792 AK090440 AK124347 AK295781
RefSeq transcript (Entrez)NM_001290268 NM_080829
RefSeq genomic (Entrez)NC_000020 NC_018931 NG_034040 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)FAM65C
Cluster EST : UnigeneHs.372578 [ NCBI ]
CGAP (NCI)Hs.372578
Alternative Splicing GalleryENSG00000042062
Gene ExpressionFAM65C [ NCBI-GEO ]   FAM65C [ EBI - ARRAY_EXPRESS ]   FAM65C [ SEEK ]   FAM65C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM65C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140876
GTEX Portal (Tissue expression)FAM65C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MK2
Splice isoforms : SwissVarQ96MK2
PhosPhoSitePlusQ96MK2
Domains : Interpro (EBI)FAM65    FAM65_N   
Domain families : Pfam (Sanger)PL48 (PF15903)   
Domain families : Pfam (NCBI)pfam15903   
Conserved Domain (NCBI)FAM65C
DMDM Disease mutations140876
Blocks (Seattle)FAM65C
SuperfamilyQ96MK2
Human Protein AtlasENSG00000042062
Peptide AtlasQ96MK2
HPRD12757
IPIIPI01009271   IPI00936569   IPI00065532   IPI00168750   
Protein Interaction databases
DIP (DOE-UCLA)Q96MK2
IntAct (EBI)Q96MK2
FunCoupENSG00000042062
BioGRIDFAM65C
STRING (EMBL)FAM65C
ZODIACFAM65C
Ontologies - Pathways
QuickGOQ96MK2
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkFAM65C
Atlas of Cancer Signalling NetworkFAM65C
Wikipedia pathwaysFAM65C
Orthology - Evolution
OrthoDB140876
GeneTree (enSembl)ENSG00000042062
Phylogenetic Trees/Animal Genes : TreeFamFAM65C
HOVERGENQ96MK2
HOGENOMQ96MK2
Homologs : HomoloGeneFAM65C
Homology/Alignments : Family Browser (UCSC)FAM65C
Gene fusions - Rearrangements
Fusion : MitelmanEIF3H/FAM65C [8q23.3/20q13.13]  [t(8;20)(q24;q13)]  
Fusion : MitelmanESCO1/FAM65C [18q11.2/20q13.13]  [t(18;20)(q11;q13)]  
Fusion: TCGAESCO1 18q11.2 FAM65C 20q13.13 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM65C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM65C
dbVarFAM65C
ClinVarFAM65C
1000_GenomesFAM65C 
Exome Variant ServerFAM65C
ExAC (Exome Aggregation Consortium)FAM65C (select the gene name)
Genetic variants : HAPMAP140876
Genomic Variants (DGV)FAM65C [DGVbeta]
DECIPHER (Syndromes)20:49202645-49308067  ENSG00000042062
CONAN: Copy Number AnalysisFAM65C 
Mutations
ICGC Data PortalFAM65C 
TCGA Data PortalFAM65C 
Broad Tumor PortalFAM65C
OASIS PortalFAM65C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM65C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM65C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM65C
DgiDB (Drug Gene Interaction Database)FAM65C
DoCM (Curated mutations)FAM65C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM65C (select a term)
intoGenFAM65C
Cancer3DFAM65C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM65C
Genetic Testing Registry FAM65C
NextProtQ96MK2 [Medical]
TSGene140876
GENETestsFAM65C
Huge Navigator FAM65C [HugePedia]
snp3D : Map Gene to Disease140876
BioCentury BCIQFAM65C
ClinGenFAM65C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140876
Chemical/Pharm GKB GenePA162387710
Clinical trialFAM65C
Miscellaneous
canSAR (ICR)FAM65C (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM65C
EVEXFAM65C
GoPubMedFAM65C
iHOPFAM65C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:47 CEST 2017

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