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FAM69A (family with sequence similarity 69, member A)

Identity

Alias_namesfamily with sequence similarity 69, member A
Alias_symbol (synonym)FLJ23493
Other alias-
HGNC (Hugo) FAM69A
LocusID (NCBI) 388650
Atlas_Id 63224
Location 1p22.1  [Link to chromosome band 1p22]
Location_base_pair Starts at 93307717 and ends at 93427079 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM69A (1p22.1) / LRRC8D (1p22.2)FAM69A (1p22.1) / NTNG1 (1p13.3)FAM69A (1p22.1) / ZNF664 (12q24.31)
FAM69A NTNG1FAM69A LRRC8D

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM69A   32213
Cards
Entrez_Gene (NCBI)FAM69A  388650  family with sequence similarity 69, member A
Aliases
GeneCards (Weizmann)FAM69A
Ensembl hg19 (Hinxton)ENSG00000154511 [Gene_View]  chr1:93307717-93427079 [Contig_View]  FAM69A [Vega]
Ensembl hg38 (Hinxton)ENSG00000154511 [Gene_View]  chr1:93307717-93427079 [Contig_View]  FAM69A [Vega]
ICGC DataPortalENSG00000154511
TCGA cBioPortalFAM69A
AceView (NCBI)FAM69A
Genatlas (Paris)FAM69A
WikiGenes388650
SOURCE (Princeton)FAM69A
Genetics Home Reference (NIH)FAM69A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM69A  -     chr1:93307717-93427079 -  1p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM69A  -     1p22.1   [Description]    (hg38-Dec_2013)
EnsemblFAM69A - 1p22.1 [CytoView hg19]  FAM69A - 1p22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM69A [Mapview hg19]  FAM69A [Mapview hg38]
OMIM614542   
Gene and transcription
Genbank (Entrez)AK027146 AK303700 AL536469 AL702320 BC070342
RefSeq transcript (Entrez)NM_001006605 NM_001252269 NM_001252270 NM_001252271 NM_001252273
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_033051 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)FAM69A
Cluster EST : UnigeneHs.180946 [ NCBI ]
CGAP (NCI)Hs.180946
Alternative Splicing GalleryENSG00000154511
Gene ExpressionFAM69A [ NCBI-GEO ]   FAM69A [ EBI - ARRAY_EXPRESS ]   FAM69A [ SEEK ]   FAM69A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM69A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388650
GTEX Portal (Tissue expression)FAM69A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7M9
Splice isoforms : SwissVarQ5T7M9
PhosPhoSitePlusQ5T7M9
Domains : Interpro (EBI)FAM69_kinase_dom    FAM69_N   
Domain families : Pfam (Sanger)PIP49_C (PF12260)    PIP49_N (PF14875)   
Domain families : Pfam (NCBI)pfam12260    pfam14875   
Conserved Domain (NCBI)FAM69A
DMDM Disease mutations388650
Blocks (Seattle)FAM69A
SuperfamilyQ5T7M9
Human Protein AtlasENSG00000154511
Peptide AtlasQ5T7M9
HPRD14204
IPIIPI00029099   IPI00844318   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7M9
IntAct (EBI)Q5T7M9
FunCoupENSG00000154511
BioGRIDFAM69A
STRING (EMBL)FAM69A
ZODIACFAM69A
Ontologies - Pathways
QuickGOQ5T7M9
Ontology : AmiGOendoplasmic reticulum membrane  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  integral component of membrane  
NDEx NetworkFAM69A
Atlas of Cancer Signalling NetworkFAM69A
Wikipedia pathwaysFAM69A
Orthology - Evolution
OrthoDB388650
GeneTree (enSembl)ENSG00000154511
Phylogenetic Trees/Animal Genes : TreeFamFAM69A
HOVERGENQ5T7M9
HOGENOMQ5T7M9
Homologs : HomoloGeneFAM69A
Homology/Alignments : Family Browser (UCSC)FAM69A
Gene fusions - Rearrangements
Fusion: TCGAFAM69A NTNG1
Fusion: TCGAFAM69A LRRC8D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM69A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM69A
dbVarFAM69A
ClinVarFAM69A
1000_GenomesFAM69A 
Exome Variant ServerFAM69A
ExAC (Exome Aggregation Consortium)FAM69A (select the gene name)
Genetic variants : HAPMAP388650
Genomic Variants (DGV)FAM69A [DGVbeta]
DECIPHER (Syndromes)1:93307717-93427079  ENSG00000154511
CONAN: Copy Number AnalysisFAM69A 
Mutations
ICGC Data PortalFAM69A 
TCGA Data PortalFAM69A 
Broad Tumor PortalFAM69A
OASIS PortalFAM69A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM69A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM69A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM69A
DgiDB (Drug Gene Interaction Database)FAM69A
DoCM (Curated mutations)FAM69A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM69A (select a term)
intoGenFAM69A
Cancer3DFAM69A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614542   
Orphanet
MedgenFAM69A
Genetic Testing Registry FAM69A
NextProtQ5T7M9 [Medical]
TSGene388650
GENETestsFAM69A
Huge Navigator FAM69A [HugePedia]
snp3D : Map Gene to Disease388650
BioCentury BCIQFAM69A
ClinGenFAM69A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388650
Chemical/Pharm GKB GenePA142671883
Clinical trialFAM69A
Miscellaneous
canSAR (ICR)FAM69A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM69A
EVEXFAM69A
GoPubMedFAM69A
iHOPFAM69A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:16 CET 2017

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