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FAM69B (family with sequence similarity 69 member B)

Identity

Alias_namesfamily with sequence similarity 69, member B
Alias_symbol (synonym)MGC20262
C9orf136
Other aliaspp6977
HGNC (Hugo) FAM69B
LocusID (NCBI) 138311
Atlas_Id 63225
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136712572 and ends at 136724718 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM69B (9q34.3) / FAM69B (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM69B   28290
Cards
Entrez_Gene (NCBI)FAM69B  138311  family with sequence similarity 69 member B
AliasesC9orf136; pp6977
GeneCards (Weizmann)FAM69B
Ensembl hg19 (Hinxton)ENSG00000165716 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165716 [Gene_View]  chr9:136712572-136724718 [Contig_View]  FAM69B [Vega]
ICGC DataPortalENSG00000165716
TCGA cBioPortalFAM69B
AceView (NCBI)FAM69B
Genatlas (Paris)FAM69B
WikiGenes138311
SOURCE (Princeton)FAM69B
Genetics Home Reference (NIH)FAM69B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM69B  -     chr9:136712572-136724718 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM69B  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblFAM69B - 9q34.3 [CytoView hg19]  FAM69B - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIFAM69B [Mapview hg19]  FAM69B [Mapview hg38]
OMIM614543   
Gene and transcription
Genbank (Entrez)AF318355 AJ420457 BC032097 BG700129
RefSeq transcript (Entrez)NM_152421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM69B
Cluster EST : UnigeneHs.741305 [ NCBI ]
CGAP (NCI)Hs.741305
Alternative Splicing GalleryENSG00000165716
Gene ExpressionFAM69B [ NCBI-GEO ]   FAM69B [ EBI - ARRAY_EXPRESS ]   FAM69B [ SEEK ]   FAM69B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM69B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138311
GTEX Portal (Tissue expression)FAM69B
Human Protein AtlasENSG00000165716-FAM69B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VUD6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VUD6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VUD6
Splice isoforms : SwissVarQ5VUD6
PhosPhoSitePlusQ5VUD6
Domains : Interpro (EBI)FAM69_kinase_dom    FAM69_N   
Domain families : Pfam (Sanger)PIP49_C (PF12260)    PIP49_N (PF14875)   
Domain families : Pfam (NCBI)pfam12260    pfam14875   
Domain families : Smart (EMBL)PIP49_N (SM01299)  
Conserved Domain (NCBI)FAM69B
DMDM Disease mutations138311
Blocks (Seattle)FAM69B
SuperfamilyQ5VUD6
Human Protein Atlas [tissue]ENSG00000165716-FAM69B [tissue]
Peptide AtlasQ5VUD6
HPRD14468
IPIIPI00166879   IPI00845425   
Protein Interaction databases
DIP (DOE-UCLA)Q5VUD6
IntAct (EBI)Q5VUD6
FunCoupENSG00000165716
BioGRIDFAM69B
STRING (EMBL)FAM69B
ZODIACFAM69B
Ontologies - Pathways
QuickGOQ5VUD6
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  integral component of membrane  
NDEx NetworkFAM69B
Atlas of Cancer Signalling NetworkFAM69B
Wikipedia pathwaysFAM69B
Orthology - Evolution
OrthoDB138311
GeneTree (enSembl)ENSG00000165716
Phylogenetic Trees/Animal Genes : TreeFamFAM69B
HOVERGENQ5VUD6
HOGENOMQ5VUD6
Homologs : HomoloGeneFAM69B
Homology/Alignments : Family Browser (UCSC)FAM69B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM69B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM69B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM69B
dbVarFAM69B
ClinVarFAM69B
1000_GenomesFAM69B 
Exome Variant ServerFAM69B
ExAC (Exome Aggregation Consortium)ENSG00000165716
GNOMAD BrowserENSG00000165716
Genetic variants : HAPMAP138311
Genomic Variants (DGV)FAM69B [DGVbeta]
DECIPHERFAM69B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM69B 
Mutations
ICGC Data PortalFAM69B 
TCGA Data PortalFAM69B 
Broad Tumor PortalFAM69B
OASIS PortalFAM69B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM69B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM69B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM69B
DgiDB (Drug Gene Interaction Database)FAM69B
DoCM (Curated mutations)FAM69B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM69B (select a term)
intoGenFAM69B
Cancer3DFAM69B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614543   
Orphanet
DisGeNETFAM69B
MedgenFAM69B
Genetic Testing Registry FAM69B
NextProtQ5VUD6 [Medical]
TSGene138311
GENETestsFAM69B
Target ValidationFAM69B
Huge Navigator FAM69B [HugePedia]
snp3D : Map Gene to Disease138311
BioCentury BCIQFAM69B
ClinGenFAM69B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138311
Chemical/Pharm GKB GenePA142671884
Clinical trialFAM69B
Miscellaneous
canSAR (ICR)FAM69B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM69B
EVEXFAM69B
GoPubMedFAM69B
iHOPFAM69B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:44 CET 2017

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