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FAM71A (family with sequence similarity 71, member A)

Identity

Alias_namesfamily with sequence similarity 71, member A
Alias_symbol (synonym)FLJ32796
Other alias-
HGNC (Hugo) FAM71A
LocusID (NCBI) 149647
Atlas_Id 63227
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212797789 and ends at 212800120 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM71A   26541
Cards
Entrez_Gene (NCBI)FAM71A  149647  family with sequence similarity 71, member A
Aliases
GeneCards (Weizmann)FAM71A
Ensembl hg19 (Hinxton)ENSG00000162771 [Gene_View]  chr1:212797789-212800120 [Contig_View]  FAM71A [Vega]
Ensembl hg38 (Hinxton)ENSG00000162771 [Gene_View]  chr1:212797789-212800120 [Contig_View]  FAM71A [Vega]
ICGC DataPortalENSG00000162771
TCGA cBioPortalFAM71A
AceView (NCBI)FAM71A
Genatlas (Paris)FAM71A
WikiGenes149647
SOURCE (Princeton)FAM71A
Genetics Home Reference (NIH)FAM71A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM71A  -     chr1:212797789-212800120 +  1q32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM71A  -     1q32.3   [Description]    (hg38-Dec_2013)
EnsemblFAM71A - 1q32.3 [CytoView hg19]  FAM71A - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBIFAM71A [Mapview hg19]  FAM71A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057358 AK301981 AK315021 BC035007 DB031502
RefSeq transcript (Entrez)NM_153606
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)FAM71A
Cluster EST : UnigeneHs.129293 [ NCBI ]
CGAP (NCI)Hs.129293
Alternative Splicing GalleryENSG00000162771
Gene ExpressionFAM71A [ NCBI-GEO ]   FAM71A [ EBI - ARRAY_EXPRESS ]   FAM71A [ SEEK ]   FAM71A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM71A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149647
GTEX Portal (Tissue expression)FAM71A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYT1
Splice isoforms : SwissVarQ8IYT1
PhosPhoSitePlusQ8IYT1
Domains : Interpro (EBI)DUF3699   
Domain families : Pfam (Sanger)DUF3699 (PF12480)   
Domain families : Pfam (NCBI)pfam12480   
Conserved Domain (NCBI)FAM71A
DMDM Disease mutations149647
Blocks (Seattle)FAM71A
SuperfamilyQ8IYT1
Human Protein AtlasENSG00000162771
Peptide AtlasQ8IYT1
HPRD08735
IPIIPI00217863   IPI01010394   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYT1
IntAct (EBI)Q8IYT1
FunCoupENSG00000162771
BioGRIDFAM71A
STRING (EMBL)FAM71A
ZODIACFAM71A
Ontologies - Pathways
QuickGOQ8IYT1
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFAM71A
Atlas of Cancer Signalling NetworkFAM71A
Wikipedia pathwaysFAM71A
Orthology - Evolution
OrthoDB149647
GeneTree (enSembl)ENSG00000162771
Phylogenetic Trees/Animal Genes : TreeFamFAM71A
HOVERGENQ8IYT1
HOGENOMQ8IYT1
Homologs : HomoloGeneFAM71A
Homology/Alignments : Family Browser (UCSC)FAM71A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM71A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM71A
dbVarFAM71A
ClinVarFAM71A
1000_GenomesFAM71A 
Exome Variant ServerFAM71A
ExAC (Exome Aggregation Consortium)FAM71A (select the gene name)
Genetic variants : HAPMAP149647
Genomic Variants (DGV)FAM71A [DGVbeta]
DECIPHER (Syndromes)1:212797789-212800120  ENSG00000162771
CONAN: Copy Number AnalysisFAM71A 
Mutations
ICGC Data PortalFAM71A 
TCGA Data PortalFAM71A 
Broad Tumor PortalFAM71A
OASIS PortalFAM71A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM71A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM71A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM71A
DgiDB (Drug Gene Interaction Database)FAM71A
DoCM (Curated mutations)FAM71A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM71A (select a term)
intoGenFAM71A
Cancer3DFAM71A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM71A
Genetic Testing Registry FAM71A
NextProtQ8IYT1 [Medical]
TSGene149647
GENETestsFAM71A
Huge Navigator FAM71A [HugePedia]
snp3D : Map Gene to Disease149647
BioCentury BCIQFAM71A
ClinGenFAM71A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149647
Chemical/Pharm GKB GenePA142671831
Clinical trialFAM71A
Miscellaneous
canSAR (ICR)FAM71A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM71A
EVEXFAM71A
GoPubMedFAM71A
iHOPFAM71A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:04:17 CET 2017

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